RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 PPP1R3GB7ZBB8 358 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 M0QZQ0 153 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 MAPK13O15264 365 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 TBX10O75333 385 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 ODC1P11926 461 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 KRT13P13646 458 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 AARSP49588 968 aaKnown RBP eCLIP24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 RBP5P82980 135 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 TFF2Q03403 129 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 VARS2Q5ST30 1063 aaKnown RBP24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 PLEKHO2Q8TD55 490 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 PARD3BQ8TEW8 1205 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 CASP10Q92851 521 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 SENP8Q96LD8 212 aa24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 BARX2Q9UMQ3 279 aaPredicted RBP24.64■■□□□ 1.54
CCDC28B-203ENST00000461819 MTCL1Q9Y4B5 1905 aaKnown RBP24.64■■□□□ 1.53
CCDC28B-203ENST00000461819 XIRP2A4UGR9 3374 aa24.64■■□□□ 1.53
CCDC28B-203ENST00000461819 BICDL2A1A5D9 508 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 ARHGEF37A1IGU5 675 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 LRRIQ3A6PVS8 624 aaPredicted RBP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 H3BQ06 376 aaPredicted RBP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 SPTLC1O15269 473 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 EPB41P11171 864 aaKnown RBP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 FKBP3Q00688 224 aaKnown RBP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 BFSP1Q12934 665 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 PAK1Q13153 545 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 AAK1Q2M2I8 961 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 INTS8Q75QN2 995 aaKnown RBP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 TRAPPC11Q7Z392 1133 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 PHF6Q8IWS0 365 aaKnown RBP eCLIP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 LRRC52Q8N7C0 313 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 TMC2Q8TDI7 906 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 GZF1Q9H116 711 aaPredicted RBP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 MTRRQ9UBK8 725 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 SIX4Q9UIU6 781 aa24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 SPTBN5Q9NRC6 3674 aaKnown RBP24.63■■□□□ 1.53
CCDC28B-203ENST00000461819 SPDYE4A6NLX3 237 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 H7C4K7 107 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 GLUD1P00367 558 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 EPCAMP16422 314 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 LTBRP36941 435 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 CLCN4P51793 760 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 VAMP7P51809 220 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 AP3M2P53677 418 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 DLX2Q07687 328 aaPredicted RBP24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 BIRC3Q13489 604 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 PALB2Q86YC2 1186 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 SLC22A17Q8WUG5 538 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 MKNK1Q9BUB5 465 aa24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 TIMM13Q9Y5L4 95 aaPredicted RBP24.62■■□□□ 1.53
CCDC28B-203ENST00000461819 KPNA7A9QM74 516 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 PHACTR2O75167 634 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 DLG4P78352 724 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 YWHAHQ04917 246 aaPredicted RBP24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 MYO1EQ12965 1108 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 KCNC3Q14003 757 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 CLUL1Q15846 466 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 ZNF280DQ6N043 979 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 CXorf38Q8TB03 319 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 ATXN2LQ8WWM7 1075 aaKnown RBP24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 CLSTN3Q9BQT9 956 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 BACE2Q9Y5Z0 518 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 CDY1Q9Y6F8 540 aa24.61■■□□□ 1.53
CCDC28B-203ENST00000461819 UNC80Q8N2C7 3258 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 CYB561D2O14569 222 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 SLC16A3O15427 465 aaKnown RBP24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 CLSTN1O94985 981 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 TYMPP19971 482 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 OR1D2P34982 312 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 STX17P56962 302 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 CLDN10P78369 228 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 MRPS5P82675 430 aaKnown RBP24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 TRPC3Q13507 836 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 CTXN3Q4LDR2 81 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 ELMSAN1Q6PJG2 1045 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 TMEM184AQ6ZMB5 413 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 ZC3H3Q8IXZ2 948 aaKnown RBP24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 ZNF516Q92618 1163 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 HPDLQ96IR7 371 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 DZANK1Q9NVP4 752 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 CLEC1BQ9P126 229 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 DSEQ9UL01 958 aa24.6■■□□□ 1.53
CCDC28B-203ENST00000461819 TRIM49P0CI25 452 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 TRIM49CP0CI26 452 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 LEXMQ3ZCV2 418 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 SCARA3Q6AZY7 606 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 OVOS1Q6IE37 1185 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 TTI2Q6NXR4 508 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 ANKRD54Q6NXT1 300 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 METTL23Q86XA0 190 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 MLKLQ8NB16 471 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 MAN1C1Q9NR34 630 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 DPP7Q9UHL4 492 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 CD207Q9UJ71 328 aa24.59■■□□□ 1.53
CCDC28B-203ENST00000461819 IKBKBO14920 756 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 ADAM12O43184 909 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 TGM5O43548 720 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 ARPP19P56211 112 aa24.58■■□□□ 1.53
CCDC28B-203ENST00000461819 ENPEPQ07075 957 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms