RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 MAGOHP61326 146 aaKnown RBP16.02■□□□□ 0.16
LDLR-202ENST00000455727 KLF1Q13351 362 aaPredicted RBP16.02■□□□□ 0.16
LDLR-202ENST00000455727 SLC29A2Q14542 456 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 PLCB4Q15147 1175 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 CCDC62Q6P9F0 684 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 TSHZ1Q6ZSZ6 1077 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 PASD1Q8IV76 773 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 RNF149Q8NC42 400 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 C3orf20Q8ND61 904 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 FEZF2Q8TBJ5 459 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 C1orf54Q8WWF1 131 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 DCLK3Q9C098 648 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 SEMA4AQ9H3S1 761 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 RBPJLQ9UBG7 517 aa16.02■□□□□ 0.16
LDLR-202ENST00000455727 SRGAP2CP0DJJ0 459 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 PTK6Q13882 451 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 C2CD6Q53TS8 623 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 C6orf118Q5T5N4 469 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 LLGL2Q6P1M3 1020 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 MMS22LQ6ZRQ5 1243 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 TRMT10CQ7L0Y3 403 aaKnown RBP16.02■□□□□ 0.15
LDLR-202ENST00000455727 ZBTB33Q86T24 672 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 ATL2Q8NHH9 583 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 EXD1Q8NHP7 514 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 ZNF518BQ9C0D4 1074 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 NIF3L1Q9GZT8 377 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 PTPRHQ9HD43 1115 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 IP6K2Q9UHH9 426 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 ANK1P16157 1881 aa16.02■□□□□ 0.15
LDLR-202ENST00000455727 ATXN2Q99700 1313 aaKnown RBP16.02■□□□□ 0.15
LDLR-202ENST00000455727 ACKR2O00590 384 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 TLR3O15455 904 aaKnown RBP16.01■□□□□ 0.15
LDLR-202ENST00000455727 FAM107AO95990 144 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 GAS8O95995 478 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 SHBGP04278 402 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 CALB1P05937 261 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 CAV1Q03135 178 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 KRT17Q04695 432 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 ADCY2Q08462 1091 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 PPIL2Q13356 520 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 KCTD2Q14681 263 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 CCNG2Q16589 344 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 ZNF568Q3ZCX4 644 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 PHLDB2Q86SQ0 1253 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 NLRP14Q86W24 1093 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 MTMR12Q9C0I1 747 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 R3HDMLQ9H3Y0 253 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 FZD8Q9H461 694 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 CHST7Q9NS84 486 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 MCM3APO60318 1980 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 TP73O15350 636 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 RIPK2O43353 540 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 CAND2O75155 1236 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 PGK2P07205 417 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 MARK3P27448 753 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 CDR1P51861 262 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 MYL6P60660 151 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 TFDP1Q14186 410 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 RHBDF2Q6PJF5 856 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 MPZL3Q6UWV2 235 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 DHX37Q8IY37 1157 aaKnown RBP16.01■□□□□ 0.15
LDLR-202ENST00000455727 CCT8L2Q96SF2 557 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 SMARCAD1Q9H4L7 1026 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 MROH8Q9H579 483 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 TXNRD2Q9NNW7 524 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 GGA2Q9UJY4 613 aa16.01■□□□□ 0.15
LDLR-202ENST00000455727 ASAP2O43150 1006 aa16■□□□□ 0.15
LDLR-202ENST00000455727 B4GALT4O60513 344 aa16■□□□□ 0.15
LDLR-202ENST00000455727 IVDP26440 423 aa16■□□□□ 0.15
LDLR-202ENST00000455727 CDH5P33151 784 aaPredicted RBP16■□□□□ 0.15
LDLR-202ENST00000455727 TAS2R40P59535 323 aa16■□□□□ 0.15
LDLR-202ENST00000455727 SKIDA1Q1XH10 827 aa16■□□□□ 0.15
LDLR-202ENST00000455727 LRRC71Q8N4P6 559 aa16■□□□□ 0.15
LDLR-202ENST00000455727 MYCBPAPQ8TBZ2 947 aa16■□□□□ 0.15
LDLR-202ENST00000455727 CENPTQ96BT3 561 aa16■□□□□ 0.15
LDLR-202ENST00000455727 SNF8Q96H20 258 aa16■□□□□ 0.15
LDLR-202ENST00000455727 CLMNQ96JQ2 1002 aa16■□□□□ 0.15
LDLR-202ENST00000455727 SPATA33Q96N06 139 aa16■□□□□ 0.15
LDLR-202ENST00000455727 MMP19Q99542 508 aa16■□□□□ 0.15
LDLR-202ENST00000455727 HERPUD2Q9BSE4 406 aa16■□□□□ 0.15
LDLR-202ENST00000455727 LRRC4CQ9HCJ2 640 aa16■□□□□ 0.15
LDLR-202ENST00000455727 CISHQ9NSE2 258 aa16■□□□□ 0.15
LDLR-202ENST00000455727 PCDHGC3Q9UN70 934 aa16■□□□□ 0.15
LDLR-202ENST00000455727 TCRBV5S1A1TA0A578 114 aa16■□□□□ 0.15
LDLR-202ENST00000455727 TMEM191CA6NGB0 347 aa16■□□□□ 0.15
LDLR-202ENST00000455727 DCDC2CA8MYV0 355 aa16■□□□□ 0.15
LDLR-202ENST00000455727 TRAPPC3O43617 180 aa16■□□□□ 0.15
LDLR-202ENST00000455727 HBP1O60381 514 aa16■□□□□ 0.15
LDLR-202ENST00000455727 HOXC6P09630 235 aa16■□□□□ 0.15
LDLR-202ENST00000455727 TMEM191BP0C7N4 346 aa16■□□□□ 0.15
LDLR-202ENST00000455727 RALAP11233 206 aa16■□□□□ 0.15
LDLR-202ENST00000455727 OSBPP22059 807 aa16■□□□□ 0.15
LDLR-202ENST00000455727 NF2P35240 595 aa16■□□□□ 0.15
LDLR-202ENST00000455727 TRPC3Q13507 836 aa16■□□□□ 0.15
LDLR-202ENST00000455727 MOGSQ13724 837 aa16■□□□□ 0.15
LDLR-202ENST00000455727 Q3C1V9 767 aa16■□□□□ 0.15
LDLR-202ENST00000455727 LRRC38Q5VT99 294 aa16■□□□□ 0.15
LDLR-202ENST00000455727 SCARA3Q6AZY7 606 aa16■□□□□ 0.15
LDLR-202ENST00000455727 FASTKD5Q7L8L6 764 aaKnown RBP16■□□□□ 0.15
LDLR-202ENST00000455727 TRIM50Q86XT4 487 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms