RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZNF667Q5HYK9 610 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 SARM1Q6SZW1 724 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 DSTYKQ6XUX3 929 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 LMO3Q8TAP4 145 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 HASPINQ8TF76 798 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 TMEM169Q96HH4 297 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 PI4K2AQ9BTU6 479 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 VRTNQ9H8Y1 702 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 MARCH5Q9NX47 278 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 GDAP2Q9NXN4 497 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 ARHGEF37A1IGU5 675 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 GOLGA6L3A6NEY3 463 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 F8W810 466 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 SPTLC1O15269 473 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 TEX33O43247 280 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 LRRN2O75325 713 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 ARHGEF15O94989 841 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 ITGB1P05556 798 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 P4HA1P13674 534 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 SLC9A1P19634 815 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 IGFBP6P24592 240 aaPredicted RBP16.95■□□□□ 0.3
USP40-206ENST00000443711 DNAJB2P25686 324 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 BRCC3P46736 316 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 AARSP49588 968 aaKnown RBP eCLIP16.95■□□□□ 0.3
USP40-206ENST00000443711 TNNC1P63316 161 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 NOP14P78316 857 aaKnown RBP16.95■□□□□ 0.3
USP40-206ENST00000443711 WDR72Q3MJ13 1102 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 TIGD5Q53EQ6 642 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 TIFAQ96CG3 184 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 SUSD3Q96L08 255 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 SENP8Q96LD8 212 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 NT5C1BQ96P26 610 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 ERGIC2Q96RQ1 377 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 C17orf80Q9BSJ5 609 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 XPO4Q9C0E2 1151 aaKnown RBP16.95■□□□□ 0.3
USP40-206ENST00000443711 STK39Q9UEW8 545 aa16.95■□□□□ 0.3
USP40-206ENST00000443711 SF3B1O75533 1304 aaKnown RBP eCLIP16.95■□□□□ 0.38e-6■■■■■ 107
USP40-206ENST00000443711 C5orf67F2Z3F1 127 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 CYB561D2O14569 222 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 FGF18O76093 207 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 PON1P27169 355 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 PLCB3Q01970 1234 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 KCNMA1Q12791 1236 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 LRMPQ12912 555 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 SYCP1Q15431 976 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 PPP2R2DQ66LE6 453 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 SPOPLQ6IQ16 392 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 FUT10Q6P4F1 479 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 TRIM65Q6PJ69 517 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 TMEM173Q86WV6 379 aaPredicted RBP16.94■□□□□ 0.3
USP40-206ENST00000443711 KLHL23Q8NBE8 558 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 BCL7CQ8WUZ0 217 aaPredicted RBP16.94■□□□□ 0.3
USP40-206ENST00000443711 FAXDC2Q96IV6 333 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 PCMTD1Q96MG8 357 aaPredicted RBP16.94■□□□□ 0.3
USP40-206ENST00000443711 TRIM5Q9C035 493 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.94■□□□□ 0.3
USP40-206ENST00000443711 NXF1Q9UBU9 619 aaKnown RBP16.94■□□□□ 0.3
USP40-206ENST00000443711 PUF60Q9UHX1 559 aaKnown RBP16.94■□□□□ 0.3
USP40-206ENST00000443711 SNX9Q9Y5X1 595 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 TRIOBPQ9H2D6 2365 aa16.94■□□□□ 0.3
USP40-206ENST00000443711 A0A1W2PQC6 194 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 M0QZQ0 153 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 HUS1O60921 280 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 FAM163BP0C2L3 166 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 DPH6Q7L8W6 267 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 DDX53Q86TM3 631 aaKnown RBP16.93■□□□□ 0.3
USP40-206ENST00000443711 FBXO22Q8NEZ5 403 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 TATDN2Q93075 761 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 ELMO3Q96BJ8 720 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 FAM81BQ96LP2 452 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 MMS19Q96T76 1030 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 C11orf84Q9BUA3 381 aaPredicted RBP16.93■□□□□ 0.3
USP40-206ENST00000443711 LSM14BQ9BX40 385 aaKnown RBP16.93■□□□□ 0.3
USP40-206ENST00000443711 GPR62Q9BZJ7 368 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 NIF3L1Q9GZT8 377 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 APOBEC3GQ9HC16 384 aaKnown RBP16.93■□□□□ 0.3
USP40-206ENST00000443711 PCDHB8Q9UN66 801 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 SIK3Q9Y2K2 1263 aa16.93■□□□□ 0.3
USP40-206ENST00000443711 I3L4J1 428 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 EFEMP2O95967 443 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 ODC1P11926 461 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 TBXAS1P24557 533 aaPredicted RBP16.92■□□□□ 0.3
USP40-206ENST00000443711 USP41Q3LFD5 358 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 FAM171A1Q5VUB5 890 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 METTL23Q86XA0 190 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 TOP6BLQ8N6T0 577 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 APPL2Q8NEU8 664 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 CYP3A43Q9HB55 503 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 PLCB1Q9NQ66 1216 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 DSEQ9UL01 958 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 MTUS1Q9ULD2 1270 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 POLIQ9UNA4 740 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 LZTS1Q9Y250 596 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 PLXNA4Q9HCM2 1894 aa16.92■□□□□ 0.3
USP40-206ENST00000443711 FSD2A1L4K1 749 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 SYN3O14994 580 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 AP5Z1O43299 807 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 SOD2P04179 222 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 CYP11A1P05108 521 aa16.91■□□□□ 0.3
USP40-206ENST00000443711 TYMPP19971 482 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 173.8 ms