RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 DMAC2Q9NW81 257 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 MTRRQ9UBK8 725 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 TRAF3IP3Q9Y228 551 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 CDY1Q9Y6F8 540 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 H7C4K7 107 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 M0QZQ0 153 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 HOXB8P17481 243 aaPredicted RBP20.14■□□□□ 0.81
SHH-204ENST00000441114 DUOXA2Q1HG44 320 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 CTXN3Q4LDR2 81 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 USP37Q86T82 979 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 WDR49Q8IV35 697 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 SLC9A9Q8IVB4 645 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 SMRP1Q8NCR6 262 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 ADAMTS19Q8TE59 1207 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 MFSD14AQ96MC6 490 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 NECAB3Q96P71 396 aaPredicted RBP20.14■□□□□ 0.81
SHH-204ENST00000441114 CGRRF1Q99675 332 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 LMBRD1Q9NUN5 540 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 DZANK1Q9NVP4 752 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 CDH22Q9UJ99 828 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 FAM50BQ9Y247 325 aa20.14■□□□□ 0.81
SHH-204ENST00000441114 R3HCC1Q9Y3T6 440 aaKnown RBP20.14■□□□□ 0.81
SHH-204ENST00000441114 USP15Q9Y4E8 981 aaPredicted RBP20.14■□□□□ 0.81
SHH-204ENST00000441114 WEE2P0C1S8 567 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 NR2F2P24468 414 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 AARSP49588 968 aaKnown RBP eCLIP20.13■□□□□ 0.81
SHH-204ENST00000441114 BFSP1Q12934 665 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 SV2CQ496J9 727 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 TMC5Q6UXY8 1006 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 ZNF560Q96MR9 790 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 S1PR5Q9H228 398 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 ITGA11Q9UKX5 1188 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 FRMD4BQ9Y2L6 1034 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 BACE2Q9Y5Z0 518 aa20.13■□□□□ 0.81
SHH-204ENST00000441114 KPNA7A9QM74 516 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 CYB561D2O14569 222 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 ODC1P11926 461 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 RBP5P82980 135 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 YWHAHQ04917 246 aaPredicted RBP20.12■□□□□ 0.81
SHH-204ENST00000441114 ADAM9Q13443 819 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 MRPL58Q14197 206 aaKnown RBP20.12■□□□□ 0.81
SHH-204ENST00000441114 ZNF280DQ6N043 979 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 CES5AQ6NT32 575 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 LILRA6Q6PI73 481 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 KREMEN2Q8NCW0 462 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 FEZF2Q8TBJ5 459 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 PLEKHO2Q8TD55 490 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 ZNF516Q92618 1163 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 SFXN1Q9H9B4 322 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 SIX4Q9UIU6 781 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 FBXL5Q9UKA1 691 aa20.12■□□□□ 0.81
SHH-204ENST00000441114 TSC2P49815 1807 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 PAX3P23760 479 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 RPL13P26373 211 aaKnown RBP20.11■□□□□ 0.81
SHH-204ENST00000441114 PNPLA4P41247 253 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 STIM1Q13586 685 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 RAB33AQ14088 237 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 MYBPC2Q14324 1141 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 OVOS1Q6IE37 1185 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 ELMSAN1Q6PJG2 1045 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 TRAPPC11Q7Z392 1133 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 ADSSL1Q8N142 457 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 EEF2KMTQ96G04 330 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 TSG101Q99816 390 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 COL25A1Q9BXS0 654 aaPredicted RBP20.11■□□□□ 0.81
SHH-204ENST00000441114 GTPBP4Q9BZE4 634 aaKnown RBP20.11■□□□□ 0.81
SHH-204ENST00000441114 ADAM7Q9H2U9 754 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 DPP7Q9UHL4 492 aa20.11■□□□□ 0.81
SHH-204ENST00000441114 C2orf16Q68DN1 1984 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 LRRIQ3A6PVS8 624 aaPredicted RBP20.1■□□□□ 0.81
SHH-204ENST00000441114 GOLGA6L22H0YM25 854 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 PHACTR2O75167 634 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 RFPL2O75678 378 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 CD44P16070 742 aaKnown RBP20.1■□□□□ 0.81
SHH-204ENST00000441114 TYMPP19971 482 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 DLG4P78352 724 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 ROR1Q01973 937 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 ITIH3Q06033 890 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 MORC3Q14149 939 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 SMAD2Q15796 467 aaKnown RBP20.1■□□□□ 0.81
SHH-204ENST00000441114 NFIL3Q16649 462 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 ZCWPW2Q504Y3 356 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 ANKRD40Q6AI12 368 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 KLHL10Q6JEL2 608 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 METTL23Q86XA0 190 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 CXorf38Q8TB03 319 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 PARD3BQ8TEW8 1205 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 BORCS6Q96GS4 357 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 UHRF1Q96T88 793 aaPredicted RBP20.1■□□□□ 0.81
SHH-204ENST00000441114 GZF1Q9H116 711 aaPredicted RBP20.1■□□□□ 0.81
SHH-204ENST00000441114 PLEKHA4Q9H4M7 779 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 UNC80Q8N2C7 3258 aa20.1■□□□□ 0.81
SHH-204ENST00000441114 CCDC195A0A1B0GUA6 201 aa20.09■□□□□ 0.81
SHH-204ENST00000441114 ARHGEF37A1IGU5 675 aa20.09■□□□□ 0.81
SHH-204ENST00000441114 TRIM49BA6NDI0 452 aa20.09■□□□□ 0.81
SHH-204ENST00000441114 TBC1D4O60343 1298 aa20.09■□□□□ 0.81
SHH-204ENST00000441114 AKAP3O75969 853 aa20.09■□□□□ 0.81
SHH-204ENST00000441114 CLSTN1O94985 981 aa20.09■□□□□ 0.81
SHH-204ENST00000441114 CST3P01034 146 aaPredicted RBP20.09■□□□□ 0.81
SHH-204ENST00000441114 OR4Q2P0C623 313 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms