RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 ALG1Q9BT22 464 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 FAM126AQ9BYI3 521 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-206ENST00000441089 RBCK1Q9BYM8 510 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 UBA5Q9GZZ9 404 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 NPHS2Q9NP85 383 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 NGRNQ9NPE2 291 aaKnown RBP5.41□□□□□ -1.54
PTPN4-206ENST00000441089 RBM28Q9NW13 759 aaKnown RBP5.41□□□□□ -1.54
PTPN4-206ENST00000441089 CHMP5Q9NZZ3 219 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 DLGAP2Q9P1A6 1054 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 ORC3Q9UBD5 711 aaPredicted RBP5.41□□□□□ -1.54
PTPN4-206ENST00000441089 PUF60Q9UHX1 559 aaKnown RBP5.41□□□□□ -1.54
PTPN4-206ENST00000441089 MTMR6Q9Y217 621 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.41□□□□□ -1.54
PTPN4-206ENST00000441089 URB1O60287 2271 aaKnown RBP5.41□□□□□ -1.54
PTPN4-206ENST00000441089 STK36Q9NRP7 1315 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 COL12A1Q99715 3063 aa5.41□□□□□ -1.54
PTPN4-206ENST00000441089 COL6A6A6NMZ7 2263 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 CACNA1EQ15878 2313 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 KLRF2D3W0D1 207 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 CPLX1O14810 134 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 ADAMTS3O15072 1205 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 PRPF3O43395 683 aaKnown RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 LEFTY1O75610 366 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 KRT1P04264 644 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 RETP07949 1114 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 CTSHP09668 335 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 FAM87AP0C7U9 286 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 STAG3L1P0CL83 205 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 ARP10275 920 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 MAGEA9P43362 315 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 HMGN5P82970 282 aaKnown RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 ZNF543Q08ER8 600 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 IKQ13123 557 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 BAATQ14032 418 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 CSRP2Q16527 193 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 SOWAHCQ53LP3 525 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 MUM1L1Q5H9M0 696 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 SLFN13Q68D06 897 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 LLGL2Q6P1M3 1020 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 KCTD1Q719H9 257 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 GMCL1P1Q8NEA9 526 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 DNERQ8NFT8 737 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 PJA1Q8NG27 643 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 CTCFLQ8NI51 663 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 ATP6V0A1Q93050 837 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 SHDQ96IW2 340 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 SLC26A6Q9BXS9 759 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 BCO2Q9BYV7 579 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 KCNK12Q9HB15 430 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 SPATA6Q9NWH7 488 aaPredicted RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 ISY1Q9ULR0 285 aaKnown RBP5.4□□□□□ -1.54
PTPN4-206ENST00000441089 LZTS1Q9Y250 596 aa5.4□□□□□ -1.54
PTPN4-206ENST00000441089 MYH6P13533 1939 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CCDC196A0A1B0GTZ2 297 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 C17orf102A2RUQ5 167 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 LRRC10BA6NIK2 292 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 SOWAHDA6NJG2 315 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 TMEM232C9JQI7 657 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 ENPP3O14638 875 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 PRRG2O14669 202 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 STX6O43752 255 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 DHX16O60231 1041 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 PLA2G6O60733 806 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 PPP1R11O60927 126 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 PPFIA4O75335 1185 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CDKL5O76039 1030 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 FGF18O76093 207 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 B3GALT4O96024 378 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CYP11A1P05108 521 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 PARP1P09874 1014 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 GNAT1P11488 350 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 SRFP11831 508 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 EDNRBP24530 442 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 KIF5BP33176 963 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 SLC16A2P36021 539 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 SLC1A4P43007 532 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 LIMK1P53667 647 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 ERVFC1P60507 584 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 GUCY1B3Q02153 619 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CSTF1Q05048 431 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 ARHGAP1Q07960 439 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 SSRP1Q08945 709 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 RESTQ13127 1097 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 POU4F3Q15319 338 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 NPY5RQ15761 445 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CCDC96Q2M329 555 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 ASPRV1Q53RT3 343 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 SPOUT1Q5T280 376 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 LARP1BQ659C4 914 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 KRTAP5-3Q6L8H2 238 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CCDC62Q6P9F0 684 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CPLX2Q6PUV4 134 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 CCDC149Q6ZUS6 474 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 NPAS4Q8IUM7 802 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 MAML2Q8IZL2 1156 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 FAM184AQ8NB25 1140 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 DCAF4Q8WV16 495 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 PIBF1Q8WXW3 757 aa5.39□□□□□ -1.55
PTPN4-206ENST00000441089 ZCCHC14Q8WYQ9 949 aaKnown RBP5.39□□□□□ -1.55
PTPN4-206ENST00000441089 NELL1Q92832 810 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms