RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 PDE11AQ9HCR9 933 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 MAN1C1Q9NR34 630 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 PRKAG3Q9UGI9 489 aa12.38□□□□□ -0.43
COL28A1-203ENST00000435823 USP15Q9Y4E8 981 aaPredicted RBP12.38□□□□□ -0.43
COL28A1-203ENST00000435823 ANO9A1A5B4 782 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 M0QZQ0 153 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 TGM5O43548 720 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 TNNC2P02585 160 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 ODC1P11926 461 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 OR1D2P34982 312 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 PNPLA4P41247 253 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 AARSP49588 968 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL28A1-203ENST00000435823 TAF6P49848 677 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 WNT7BP56706 349 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 LILRA4P59901 499 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 SV2CQ496J9 727 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 LIN9Q5TKA1 542 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 ZNF280DQ6N043 979 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 USP37Q86T82 979 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 TMEM130Q8N3G9 435 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 GUF1Q8N442 669 aaKnown RBP12.37□□□□□ -0.43
COL28A1-203ENST00000435823 RIPOR3Q96MK2 946 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 NECTIN4Q96NY8 510 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 IPO9Q96P70 1041 aaKnown RBP12.37□□□□□ -0.43
COL28A1-203ENST00000435823 S1PR5Q9H228 398 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 KCTD10Q9H3F6 313 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 ITGA11Q9UKX5 1188 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 MAPK8IP1Q9UQF2 711 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 CDY1Q9Y6F8 540 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 UNC80Q8N2C7 3258 aa12.37□□□□□ -0.43
COL28A1-203ENST00000435823 PLXNA3P51805 1871 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 PPEF2O14830 753 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 PRPF40AO75400 957 aaKnown RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 NR3C1P04150 777 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 ITGB3P05106 788 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 KRT19P08727 400 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 SPATA31D3P0C874 917 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 TNNI1P19237 187 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 TYMPP19971 482 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 SSTR3P32745 418 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 MTHFRP42898 656 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 RBP5P82980 135 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 YWHAHQ04917 246 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 CYP24A1Q07973 514 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 RAB33AQ14088 237 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 MRPL58Q14197 206 aaKnown RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 MYBPC2Q14324 1141 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 CBX2Q14781 532 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 PSMD6Q15008 389 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 DUOXA2Q1HG44 320 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 CTXN3Q4LDR2 81 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 ATAT1Q5SQI0 421 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 ZNF658Q5TYW1 1059 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 LILRA6Q6PI73 481 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 TMC5Q6UXY8 1006 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 SPATA31D4Q6ZUB0 917 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 WDR49Q8IV35 697 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 SLC9A9Q8IVB4 645 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 ADHFE1Q8IWW8 467 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 C12orf76Q8N812 135 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 C1orf127Q8N9H9 656 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 KREMEN2Q8NCW0 462 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 SUSD6Q92537 303 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 SENP8Q96LD8 212 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 NECAB3Q96P71 396 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 OXCT2Q9BYC2 517 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-203ENST00000435823 MTMR12Q9C0I1 747 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 INTS13Q9NVM9 706 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 DSEQ9UL01 958 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 AGAP1Q9UPQ3 857 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 TRAF3IP3Q9Y228 551 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 PCDHA5Q9Y5H7 936 aa12.36□□□□□ -0.43
COL28A1-203ENST00000435823 KPNA7A9QM74 516 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 ADAM12O43184 909 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 DLATP10515 647 aaKnown RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 RPL13P26373 211 aaKnown RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 POLR2BP30876 1174 aaKnown RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 ARPP19P56211 112 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 CEP135Q66GS9 1140 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 LMBRD2Q68DH5 695 aaPredicted RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 OVOS1Q6IE37 1185 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 SLC8B1Q6J4K2 584 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 RSPO2Q6UXX9 243 aaPredicted RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 CYP26C1Q6V0L0 522 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 C15orf39Q6ZRI6 1047 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 GPR149Q86SP6 731 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 METTL23Q86XA0 190 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 GJD3Q8N144 294 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 CSGALNACT2Q8N6G5 542 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 LRRC52Q8N7C0 313 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 CMASQ8NFW8 434 aaPredicted RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 SPATA20Q8TB22 786 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 TMEM174Q8WUU8 243 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 ERCC4Q92889 916 aaPredicted RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 CCDC127Q96BQ5 260 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 CGRRF1Q99675 332 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 PHF7Q9BWX1 381 aaPredicted RBP12.35□□□□□ -0.43
COL28A1-203ENST00000435823 DMAC2Q9NW81 257 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 ZDHHC7Q9NXF8 308 aa12.35□□□□□ -0.43
COL28A1-203ENST00000435823 FBXL5Q9UKA1 691 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms