RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 DYDC1Q8WWB3 177 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 MAGEB18Q96M61 343 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ELAC2Q9BQ52 826 aaKnown RBP14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ZNF518BQ9C0D4 1074 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 PORCNQ9H237 461 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SENP1Q9P0U3 644 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SEPT9Q9UHD8 586 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ACSL3O95573 720 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 CALB1P05937 261 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 BACE1P56817 501 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 ACTR2P61160 394 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 CXCL9Q07325 125 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 CCDC15Q0P6D6 951 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 MTMR2Q13614 643 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 GALNTL6Q49A17 601 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 UBAP2Q5T6F2 1119 aaKnown RBP14.5□□□□□ -0.09
COL6A3-207ENST00000433762 DCAF15Q66K64 600 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 CIAPIN1Q6FI81 312 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 SWSAP1Q6NVH7 229 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 ANKS1BQ7Z6G8 1248 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 ANKRD35Q8N283 1001 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 FEZF2Q8TBJ5 459 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 CPA5Q8WXQ8 436 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 ZKSCAN4Q969J2 545 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-207ENST00000433762 CFAP57Q96MR6 1250 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 PI4K2AQ9BTU6 479 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 FRMD8P1Q9BZ68 369 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-207ENST00000433762 DHX33Q9H6R0 707 aaKnown RBP14.5□□□□□ -0.09
COL6A3-207ENST00000433762 ARL2BPQ9Y2Y0 163 aa14.5□□□□□ -0.09
COL6A3-207ENST00000433762 MAFBQ9Y5Q3 323 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-207ENST00000433762 VNN1O95497 513 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 TNNI1P19237 187 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 GNA15P30679 374 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 RFC5P40937 340 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 SKIV2L2P42285 1042 aaKnown RBP14.49□□□□□ -0.09
COL6A3-207ENST00000433762 SNX1Q13596 522 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 CCDC142Q17RM4 750 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 RGS9BPQ6ZS82 235 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 CCDC60Q8IWA6 550 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-207ENST00000433762 CCDC63Q8NA47 563 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 NCAPGQ9BPX3 1015 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 NIFKQ9BYG3 293 aaKnown RBP14.49□□□□□ -0.09
COL6A3-207ENST00000433762 ZNF112Q9UJU3 913 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 EFR3BQ9Y2G0 817 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 A0A0B4J269 797 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 C19orf81C9J6K1 198 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 RGS20O76081 388 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 DSG3P32926 999 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 ARL2P36404 184 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 ELF3P78545 371 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-207ENST00000433762 IZUMO3Q5VZ72 239 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 RNF43Q68DV7 783 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 NIPA2Q8N8Q9 360 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 ATG4AQ8WYN0 398 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 ATG4CQ96DT6 458 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 HERPUD2Q9BSE4 406 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 CCDC113Q9H0I3 377 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 NKIRAS1Q9NYS0 192 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 PPP1R1BQ9UD71 204 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-207ENST00000433762 FETUBQ9UGM5 382 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 ADGRA2Q96PE1 1338 aa14.49□□□□□ -0.09
COL6A3-207ENST00000433762 DNALI1O14645 258 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 TJP3O95049 919 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 BRAFP15056 766 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 MMP8P22894 467 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 KYNUQ16719 465 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 EAPPQ56P03 285 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 RBBP8NLQ8NC74 664 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 DDX56Q9NY93 547 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 RBAKQ9NYW8 714 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 PRKAG3Q9UGI9 489 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 ZNF214Q9UL59 606 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 R3HDM2Q9Y2K5 976 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 PCDHB4Q9Y5E5 795 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 CNTNAP2Q9UHC6 1331 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 TLR3O15455 904 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 MAGEB2O15479 319 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 CDH5P33151 784 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 POLGP54098 1239 aaPredicted RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 NOP14P78316 857 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 NFX1Q12986 1120 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 SURF1Q15526 300 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 ZPBP2Q6X784 338 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 SCYL3Q8IZE3 742 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 UHMK1Q8TAS1 419 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 SGIP1Q9BQI5 828 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 TRIM7Q9C029 511 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 ACAD9Q9H845 621 aa14.48□□□□□ -0.09
COL6A3-207ENST00000433762 GEMIN8Q9NWZ8 242 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 TPX2Q9ULW0 747 aaKnown RBP14.48□□□□□ -0.09
COL6A3-207ENST00000433762 TMEM191CA6NGB0 347 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TCP11X1B4DZS4 312 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 PRPF4O43172 522 aaKnown RBP eCLIP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 LIASO43766 372 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TMEM191BP0C7N4 346 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 KCNA3P22001 575 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 NLRP11P59045 1033 aaKnown RBP14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TAS2R40P59535 323 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 TGFB2P61812 414 aa14.47□□□□□ -0.09
COL6A3-207ENST00000433762 BNIP1Q12981 228 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms