RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TMEM59LQ9UK28 342 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 KIAA1217Q5T5P2 1943 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 PPEF2O14830 753 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 MAPK13O15264 365 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 OPA1O60313 960 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 GRIN3BO60391 1043 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 ITGB3P05106 788 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 PRKCBP05771 671 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 CD48P09326 243 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 PDGFRBP09619 1106 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 TMEM191BP0C7N4 346 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 AKAP5P24588 427 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 RPS12P25398 132 aaKnown RBP8.9□□□□□ -0.98
CD44-208ENST00000428726 QPCTQ16769 361 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 SCYL2Q6P3W7 929 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 EFCAB13Q8IY85 973 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 IQCKQ8N0W5 287 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 CCDC26Q8TAB7 109 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 NLRP7Q8WX94 980 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 GPRASP2Q96D09 838 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 CALR3Q96L12 384 aaKnown RBP8.9□□□□□ -0.98
CD44-208ENST00000428726 MMP19Q99542 508 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 KLF6Q99612 283 aaPredicted RBP8.9□□□□□ -0.98
CD44-208ENST00000428726 SMYD3Q9H7B4 428 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 CDHR5Q9HBB8 845 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 CD248Q9HCU0 757 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 KCNK9Q9NPC2 374 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 ANKEF1Q9NU02 776 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 SETD4Q9NVD3 440 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 PRUNE2Q8WUY3 3088 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 MROH7Q68CQ1 1323 aa8.9□□□□□ -0.98
CD44-208ENST00000428726 LRRD1A4D1F6 860 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 MYZAPP0CAP1 466 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 INSRRP14616 1297 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 OGDHQ02218 1023 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 KRT17Q04695 432 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 FAXCQ5TGI0 409 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 XRRA1Q6P2D8 792 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 ANKMY2Q8IV38 441 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 KIAA0319LQ8IZA0 1049 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 OTUD6BQ8N6M0 293 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 UBL4BQ8N7F7 174 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 MCPH1Q8NEM0 835 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 ZNF606Q8WXB4 792 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 PPM1EQ8WY54 764 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 SEPT1Q8WYJ6 367 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 DDX1Q92499 740 aaKnown RBP8.9□□□□□ -0.99
CD44-208ENST00000428726 HSPH1Q92598 858 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 JPH2Q9BR39 696 aaPredicted RBP8.9□□□□□ -0.99
CD44-208ENST00000428726 SYT17Q9BSW7 474 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 MIS12Q9H081 205 aa8.9□□□□□ -0.99
CD44-208ENST00000428726 ALG13Q9NP73 1137 aaKnown RBP8.9□□□□□ -0.99
CD44-208ENST00000428726 NCANO14594 1321 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 GRIN2DO15399 1336 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 EIF4E1BA6NMX2 242 aaKnown RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 GPR25O00155 361 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 EIF3HO15372 352 aaKnown RBP eCLIP8.89□□□□□ -0.99
CD44-208ENST00000428726 ZBTB48P10074 688 aaPredicted RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 CUL2Q13617 745 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 FASTKD3Q14CZ7 662 aaKnown RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 MCOLN2Q8IZK6 566 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 GPC2Q8N158 579 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 EIF1ADQ8N9N8 165 aaKnown RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 RDM1Q8NG50 284 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 JOSD2Q8TAC2 188 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 PSPC1Q8WXF1 523 aaKnown RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.89□□□□□ -0.99
CD44-208ENST00000428726 SLC10A4Q96EP9 437 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 PGLYRP2Q96PD5 576 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 ISCUQ9H1K1 167 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 ARHGAP28Q9P2N2 729 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 CPA4Q9UI42 421 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 IVNS1ABPQ9Y6Y0 642 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 SSC5DA1L4H1 1573 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 GOLGA6L10A0A0M3HER8 536 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 GOLGA8KD6RF30 607 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 POC1B-GALNT4F8VUJ3 575 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 CCDC188H7C350 402 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 EXTL3O43909 919 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 C4BPAP04003 597 aaKnown RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 BEX3Q00994 111 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 PPFIA1Q13136 1202 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 SPRED3Q2MJR0 410 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 ICE2Q659A1 982 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 ACAD10Q6JQN1 1059 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 DENND1BQ6P3S1 775 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 DPP9Q86TI2 863 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 ZC3H18Q86VM9 953 aaKnown RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 SLC13A5Q86YT5 568 aaPredicted RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 RNF169Q8NCN4 708 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 RAPGEF5Q92565 580 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 TRIM56Q9BRZ2 755 aaKnown RBP8.89□□□□□ -0.99
CD44-208ENST00000428726 ERP44Q9BS26 406 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 TMEM121Q9BTD3 319 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 CISHQ9NSE2 258 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 ZNF148Q9UQR1 794 aa8.89□□□□□ -0.99
CD44-208ENST00000428726 C19orf81C9J6K1 198 aa8.88□□□□□ -0.99
CD44-208ENST00000428726 GOLGA8RI6L899 631 aa8.88□□□□□ -0.99
CD44-208ENST00000428726 PMM2O15305 246 aa8.88□□□□□ -0.99
CD44-208ENST00000428726 SPAG7O75391 227 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms