RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 SMYD5Q6GMV2 418 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 NT5DC4Q86YG4 428 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 PASD1Q8IV76 773 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 ZNF606Q8WXB4 792 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 SNTG2Q9NY99 539 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 ALG6Q9Y672 507 aa28.3■■■□□ 2.12
LDB1-202ENST00000425280 SCN10AQ9Y5Y9 1956 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 PCNTO95613 3336 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 DDX3YO15523 660 aaKnown RBP28.29■■■□□ 2.12
LDB1-202ENST00000425280 RARBP10826 455 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 AXLP30530 894 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 ATICP31939 592 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 NSFP46459 744 aaKnown RBP28.29■■■□□ 2.12
LDB1-202ENST00000425280 NOMO3P69849 1222 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 NKX3-2P78367 333 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 BRD3Q15059 726 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 WDR72Q3MJ13 1102 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 SPC25Q9HBM1 224 aa28.29■■■□□ 2.12
LDB1-202ENST00000425280 RBM12Q9NTZ6 932 aaKnown RBP28.29■■■□□ 2.12
LDB1-202ENST00000425280 POLR2BP30876 1174 aaKnown RBP28.28■■■□□ 2.12
LDB1-202ENST00000425280 CRYBB1P53674 252 aaPredicted RBP28.28■■■□□ 2.12
LDB1-202ENST00000425280 YWHAEP62258 255 aaKnown RBP28.28■■■□□ 2.12
LDB1-202ENST00000425280 ZNF394Q53GI3 561 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 KIF12Q96FN5 646 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 FAXDC2Q96IV6 333 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 SELENOOQ9BVL4 669 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 CXCL16Q9H2A7 254 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 VRTNQ9H8Y1 702 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 PLEKHA5Q9HAU0 1116 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 RNF186Q9NXI6 227 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 ITGA11Q9UKX5 1188 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 RALGAPA2Q2PPJ7 1873 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 CEP104O60308 925 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 RAP1GAPP47736 663 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 RNASE9P60153 205 aaKnown RBP28.28■■■□□ 2.12
LDB1-202ENST00000425280 NBPF20Q3BBV1 942 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 TMCO3Q6UWJ1 677 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 MON1BQ7L1V2 547 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 AVENQ9NQS1 362 aaPredicted RBP28.28■■■□□ 2.12
LDB1-202ENST00000425280 DPP3Q9NY33 737 aa28.28■■■□□ 2.12
LDB1-202ENST00000425280 CCDC151A5D8V7 595 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 TMEM110-MUSTN1A8MSY1 372 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 MYBL1P10243 752 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 VSNL1P62760 191 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 MESDQ14696 234 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 CC2D1AQ6P1N0 951 aaPredicted RBP28.27■■■□□ 2.12
LDB1-202ENST00000425280 REM2Q8IYK8 340 aaPredicted RBP28.27■■■□□ 2.12
LDB1-202ENST00000425280 ACTRT1Q8TDG2 376 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 TRIM11Q96F44 468 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 SNX27Q96L92 541 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 ZSWIM1Q9BR11 485 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 SDCBP2Q9H190 292 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 GTF2IRD1Q9UHL9 959 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 AGAP1Q9UPQ3 857 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 HES2Q9Y543 173 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 TARSL2A2RTX5 802 aaKnown RBP28.27■■■□□ 2.12
LDB1-202ENST00000425280 BRD2P25440 801 aaKnown RBP28.27■■■□□ 2.12
LDB1-202ENST00000425280 TAF2Q6P1X5 1199 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 USP38Q8NB14 1042 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 BTBD6Q96KE9 485 aa28.27■■■□□ 2.12
LDB1-202ENST00000425280 PIN4Q9Y237 131 aaKnown RBP28.27■■■□□ 2.12
LDB1-202ENST00000425280 TRIP11Q15643 1979 aa28.26■■■□□ 2.12
LDB1-202ENST00000425280 ADAMTS4O75173 837 aa28.26■■■□□ 2.11
LDB1-202ENST00000425280 TUBBP07437 444 aa28.26■■■□□ 2.11
LDB1-202ENST00000425280 CCND3P30281 292 aaPredicted RBP28.26■■■□□ 2.11
LDB1-202ENST00000425280 WDR93Q6P2C0 686 aa28.26■■■□□ 2.11
LDB1-202ENST00000425280 RASGEF1CQ8N431 466 aa28.26■■■□□ 2.11
LDB1-202ENST00000425280 HPDLQ96IR7 371 aa28.26■■■□□ 2.11
LDB1-202ENST00000425280 NXF3Q9H4D5 531 aaKnown RBP28.26■■■□□ 2.11
LDB1-202ENST00000425280 DERAQ9Y315 318 aa28.26■■■□□ 2.11
LDB1-202ENST00000425280 SEC31AO94979 1220 aaKnown RBP28.25■■■□□ 2.11
LDB1-202ENST00000425280 ELNP15502 786 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 RRM1P23921 792 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 CDH8P55286 799 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 RBP5P82980 135 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 PHF13Q86YI8 300 aaPredicted RBP28.25■■■□□ 2.11
LDB1-202ENST00000425280 RPS6KC1Q96S38 1066 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 SMYD3Q9H7B4 428 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 COMTP21964 271 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 C2CD6Q53TS8 623 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 TFAP2BQ92481 460 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 ZMAT2Q96NC0 199 aaKnown RBP28.25■■■□□ 2.11
LDB1-202ENST00000425280 LRRC1Q9BTT6 524 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 TRIM6Q9C030 488 aaPredicted RBP28.25■■■□□ 2.11
LDB1-202ENST00000425280 XPNPEP3Q9NQH7 507 aa28.25■■■□□ 2.11
LDB1-202ENST00000425280 ZRANB2O95218 330 aaKnown RBP eCLIP28.24■■■□□ 2.114e-6■□□□□ 8.7
LDB1-202ENST00000425280 PRKAR2AP13861 404 aaKnown RBP28.24■■■□□ 2.11
LDB1-202ENST00000425280 YARSP54577 528 aaKnown RBP28.24■■■□□ 2.11
LDB1-202ENST00000425280 DCAF12L1Q5VU92 463 aa28.24■■■□□ 2.11
LDB1-202ENST00000425280 GDF6Q6KF10 455 aaPredicted RBP28.24■■■□□ 2.11
LDB1-202ENST00000425280 C11orf70Q9BRQ4 267 aa28.24■■■□□ 2.11
LDB1-202ENST00000425280 CELF4Q9BZC1 486 aaKnown RBP28.24■■■□□ 2.11
LDB1-202ENST00000425280 TMEM59LQ9UK28 342 aa28.24■■■□□ 2.11
LDB1-202ENST00000425280 UBXN11Q5T124 520 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 CCDC70Q6NSX1 233 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 LLGL2Q6P1M3 1020 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 VCPIP1Q96JH7 1222 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.23■■■□□ 2.113e-9■■□□□ 11.4
LDB1-202ENST00000425280 ADAM22Q9P0K1 906 aa28.23■■■□□ 2.11
LDB1-202ENST00000425280 MIF4GDA9UHW6 222 aaKnown RBP28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms