RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 BPIFB4P59827 614 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 CD69Q07108 199 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 GPR158Q5T848 1215 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 LDHAL6AQ6ZMR3 332 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 FRMD7Q6ZUT3 714 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 GAREM2Q75VX8 874 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 PRRT2Q7Z6L0 340 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 RASSF3Q86WH2 238 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 DDX42Q86XP3 938 aaKnown RBP eCLIP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 GPR135Q8IZ08 494 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 FUKQ8N0W3 1084 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 EAF2Q96CJ1 260 aaPredicted RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 CHMP4BQ9H444 224 aaKnown RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 BICC1Q9H694 974 aaKnown RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 AGO3Q9H9G7 860 aaKnown RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 TYW1Q9NV66 732 aaKnown RBP3.04□□□□□ -1.92
VPS13A-208ENST00000423463 TMPRSS11EQ9UL52 423 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 ATP8A1Q9Y2Q0 1164 aa3.04□□□□□ -1.92
VPS13A-208ENST00000423463 TNRC6CQ9HCJ0 1690 aaKnown RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 COL11A2P13942 1736 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 A0A0A6YYJ9 748 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 PRRG2O14669 202 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 GPR39O43194 453 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 BRINP1O60477 761 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 H2AFYO75367 372 aaKnown RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 DDNO94850 711 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 UFL1O94874 794 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 GNAI2P04899 355 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 CDKN1CP49918 316 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 KRTAP10-2P60368 255 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 CHRNDQ07001 517 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 MTX1Q13505 466 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 TNIP1Q15025 636 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 LCE1DQ5T752 114 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 C15orf52Q6ZUT6 534 aaKnown RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 FTSJ3Q8IY81 847 aaKnown RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 GPC2Q8N158 579 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 TMEM57Q8N5G2 664 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 HIST1H2AHQ96KK5 128 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 MEIS3Q99687 375 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 HIST1H2AJQ99878 128 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 TRIM8Q9BZR9 551 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 KCTD10Q9H3F6 313 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 CNNM1Q9NRU3 951 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 NCDNQ9UBB6 729 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 TNNQ9UQP3 1299 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 RIPOR2Q9Y4F9 1068 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 LRRFIP2Q9Y608 721 aaKnown RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 MROH5Q6ZUA9 1318 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 CHD4Q14839 1912 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 EYA2O00167 538 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 SLC26A4O43511 780 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 MAFO75444 373 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 RFX5P48382 616 aaPredicted RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 LGALS4P56470 323 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 SESN3P58005 492 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 ATP8B2P98198 1209 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 CXCL9Q07325 125 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 MGAT5Q09328 741 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 RIN1Q13671 783 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 UBE4AQ14139 1066 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 KRT40Q6A162 431 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 CDYL2Q8N8U2 506 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 PIK3C3Q8NEB9 887 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 SHCBP1Q8NEM2 672 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 GPHA2Q96T91 129 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 KRTAP3-1Q9BYR8 98 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 COA1Q9GZY4 146 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 QRSL1Q9H0R6 528 aaKnown RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 NMRK2Q9NPI5 230 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 PRSS50Q9UI38 385 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 MCM8Q9UJA3 840 aa3.03□□□□□ -1.92
VPS13A-208ENST00000423463 ZFR2Q9UPR6 939 aaKnown RBP3.03□□□□□ -1.92
VPS13A-208ENST00000423463 ZNF804BA4D1E1 1349 aa3.03□□□□□ -1.93
VPS13A-208ENST00000423463 A0A1W2PRX2 142 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 PATE3B3GLJ2 98 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ECE2O60344 883 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ULK1O75385 1050 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CIAO1O76071 339 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 TOMM70O94826 608 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CFBP00751 764 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 OSMP13725 252 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 KCNJ4P48050 445 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CDK17Q00537 523 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 DUSP8Q13202 625 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 NFYCQ13952 458 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 MVPQ14764 893 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 FER1L6Q2WGJ9 1857 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ERICH6BQ5W0A0 696 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CLEC14AQ86T13 490 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ITPRIPQ8IWB1 547 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 DDX60Q8IY21 1712 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 C16orf71Q8IYS4 520 aaPredicted RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 MSL3Q8N5Y2 521 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 CHST13Q8NET6 341 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 DPF2Q92785 391 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 AHCYL2Q96HN2 611 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 PUS3Q9BZE2 481 aaKnown RBP3.02□□□□□ -1.93
VPS13A-208ENST00000423463 SEC61A2Q9H9S3 476 aa3.02□□□□□ -1.93
VPS13A-208ENST00000423463 ING3Q9NXR8 418 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms