RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZNF280CQ8ND82 737 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF507Q8TCN5 953 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 TDRD3Q9H7E2 651 aaKnown RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 IARS2Q9NSE4 1012 aaKnown RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 GALNT8Q9NY28 637 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SEPT3Q9UH03 358 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SATB2Q9UPW6 733 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SESN1Q9Y6P5 492 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RTN2O75298 545 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 PRKCBP05771 671 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 PGK2P07205 417 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 PLCL1Q15111 1095 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RABGAP1LQ5R372 815 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 C6orf10Q5SRN2 563 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 FBXW10Q5XX13 1052 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 CYP4Z1Q86W10 505 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MAP4K1Q92918 833 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 STAMBPL1Q96FJ0 436 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 STK33Q9BYT3 514 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ERAP1Q9NZ08 941 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 CDYLQ9Y232 598 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 FAM50BQ9Y247 325 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 STK36Q9NRP7 1315 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RFC5P40937 340 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SERPINB9P50453 376 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ALDH6A1Q02252 535 aaKnown RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 CYFIP1Q7L576 1253 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 GPRC5AQ8NFJ5 357 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 EIF2AK1Q9BQI3 630 aaKnown RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 KCND2Q9NZV8 630 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SAE1Q9UBE0 346 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MYO1CO00159 1063 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 GPR182O15218 404 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 GAS2O43903 313 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ADCY3O60266 1144 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 MZF1P28698 734 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 CDC27P30260 824 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 RCAN1P53805 252 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 YWHAZP63104 245 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 NFIAQ12857 509 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PDIA2Q13087 525 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 DHX34Q14147 1143 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SGSM1Q2NKQ1 1148 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 LVRNQ6Q4G3 990 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 POTEAQ6S8J7 498 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 APLFQ8IW19 511 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 DYDC2Q96IM9 177 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 RBBP8Q99708 897 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ADI1Q9BV57 179 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 NARFQ9UHQ1 456 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 DSEQ9UL01 958 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ADGRL3Q9HAR2 1447 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 EEF2KO00418 725 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SLC7A5Q01650 507 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF177Q13360 481 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PDK1Q15118 436 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PFKFB3Q16875 520 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 FRMD5Q7Z6J6 570 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PABPC5Q96DU9 382 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 MCCC1Q96RQ3 725 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 TEX13BQ9BXU2 312 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PHACTR1Q9C0D0 580 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 DDX28Q9NUL7 540 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PLAAQ9Y263 795 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PRIM2P49643 509 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 RAB14P61106 215 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ZRANB3Q5FWF4 1079 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 C10orf120Q5SQS8 335 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ADGRF4Q8IZF3 695 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 TGS1Q96RS0 853 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 WWP1Q9H0M0 922 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 IMPAD1Q9NX62 359 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 CRLS1Q9UJA2 301 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 COL15A1P39059 1388 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 FAM187AA6NFU0 413 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SOX6P35712 828 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ARSEP51690 589 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 KPNA1P52294 538 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ARFIP2P53365 341 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SNRPFP62306 86 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 BFSP2Q13515 415 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 HIC1Q14526 733 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 COBLL1Q53SF7 1204 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 PHACTR4Q8IZ21 702 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ARHGEF26Q96DR7 871 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 HEMGNQ9BXL5 484 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SPTLC3Q9NUV7 552 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 ARHGEF5Q12774 1597 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 F8W810 466 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 FTLP02792 175 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 MAPK1P28482 360 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 GTF2A2P52657 109 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 TBL3Q12788 808 aaKnown RBP7.17□□□□□ -1.26
SCN1A-204ENST00000423058 MMRN1Q13201 1228 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SP8Q8IXZ3 490 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 KIAA2013Q8IYS2 634 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SPIRE2Q8WWL2 714 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 SENP7Q9BQF6 1050 aa7.17□□□□□ -1.26
SCN1A-204ENST00000423058 WDR41Q9HAD4 459 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms