RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 FNTBP49356 437 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 DUSP4Q13115 394 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 ORC2Q13416 577 aaPredicted RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 KRT79Q5XKE5 535 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 TPGS2Q68CL5 300 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 HEATR6Q6AI08 1181 aaKnown RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 IQCEQ6IPM2 695 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 ZNF280DQ6N043 979 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 TXNDC11Q6PKC3 985 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 PRR23BQ6ZRT6 265 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 Q6ZS52 159 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 APBB1IPQ7Z5R6 666 aaPredicted RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 TMC8Q8IU68 726 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 FAM184AQ8NB25 1140 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 LRRC15Q8TF66 581 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 DNASE1L2Q92874 299 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 IRF7Q92985 503 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 KIF12Q96FN5 646 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 CHRDQ9H2X0 955 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 SLITRK6Q9H5Y7 841 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 AFF4Q9UHB7 1163 aaKnown RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 NOL7Q9UMY1 257 aaKnown RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 PCDHB8Q9UN66 801 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 MRPS17Q9Y2R5 130 aaKnown RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 YIPF1Q9Y548 306 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 CACNA1AO00555 2505 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 CACNA1IQ9P0X4 2223 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 MAN2B1O00754 1011 aa8.83□□□□□ -1
VIM-202ENST00000421459 GDF9O60383 454 aa8.83□□□□□ -1
VIM-202ENST00000421459 TOM1L1O75674 476 aa8.83□□□□□ -1
VIM-202ENST00000421459 MICAL2O94851 1124 aa8.83□□□□□ -1
VIM-202ENST00000421459 PLS3P13797 630 aa8.83□□□□□ -1
VIM-202ENST00000421459 U2AF2P26368 475 aaKnown RBP eCLIP8.83□□□□□ -1
VIM-202ENST00000421459 MATR3P43243 847 aaKnown RBP eCLIP8.83□□□□□ -1
VIM-202ENST00000421459 TRAPPC10P48553 1259 aa8.83□□□□□ -1
VIM-202ENST00000421459 EPHA5P54756 1037 aa8.83□□□□□ -1
VIM-202ENST00000421459 MCL1Q07820 350 aa8.83□□□□□ -1
VIM-202ENST00000421459 NOLC1Q14978 699 aaKnown RBP eCLIP8.83□□□□□ -1
VIM-202ENST00000421459 ZBTB6Q15916 424 aa8.83□□□□□ -1
VIM-202ENST00000421459 ARSHQ5FYA8 562 aa8.83□□□□□ -1
VIM-202ENST00000421459 DTHD1Q6ZMT9 781 aa8.83□□□□□ -1
VIM-202ENST00000421459 GAREM2Q75VX8 874 aa8.83□□□□□ -1
VIM-202ENST00000421459 MFSD6LQ8IWD5 586 aa8.83□□□□□ -1
VIM-202ENST00000421459 ELMOD1Q8N336 334 aa8.83□□□□□ -1
VIM-202ENST00000421459 ATAD1Q8NBU5 361 aa8.83□□□□□ -1
VIM-202ENST00000421459 APPL2Q8NEU8 664 aa8.83□□□□□ -1
VIM-202ENST00000421459 FAM212AQ96EL1 285 aa8.83□□□□□ -1
VIM-202ENST00000421459 DRC1Q96MC2 740 aa8.83□□□□□ -1
VIM-202ENST00000421459 KIF2CQ99661 725 aa8.83□□□□□ -1
VIM-202ENST00000421459 LLPHQ9BRT6 129 aaKnown RBP8.83□□□□□ -1
VIM-202ENST00000421459 NTPCRQ9BSD7 190 aaKnown RBP8.83□□□□□ -1
VIM-202ENST00000421459 MKNK1Q9BUB5 465 aa8.83□□□□□ -1
VIM-202ENST00000421459 SMG9Q9H0W8 520 aaKnown RBP8.83□□□□□ -1
VIM-202ENST00000421459 ASAH2Q9NR71 780 aa8.83□□□□□ -1
VIM-202ENST00000421459 POLR3BQ9NW08 1133 aaPredicted RBP8.83□□□□□ -1
VIM-202ENST00000421459 RBM19Q9Y4C8 960 aaKnown RBP8.83□□□□□ -1
VIM-202ENST00000421459 PATJQ8NI35 1801 aa8.82□□□□□ -1
VIM-202ENST00000421459 TTC26A0AVF1 554 aa8.82□□□□□ -1
VIM-202ENST00000421459 MTMR11A4FU01 709 aa8.82□□□□□ -1
VIM-202ENST00000421459 TISP43B9A030 160 aa8.82□□□□□ -1
VIM-202ENST00000421459 M0QZQ0 153 aa8.82□□□□□ -1
VIM-202ENST00000421459 CLDN3O15551 220 aa8.82□□□□□ -1
VIM-202ENST00000421459 OAZ2O95190 189 aa8.82□□□□□ -1
VIM-202ENST00000421459 PLA2G4BP0C869 781 aa8.82□□□□□ -1
VIM-202ENST00000421459 GUCY2CP25092 1073 aa8.82□□□□□ -1
VIM-202ENST00000421459 CXCL12P48061 93 aa8.82□□□□□ -1
VIM-202ENST00000421459 PXNP49023 591 aaPredicted RBP8.82□□□□□ -1
VIM-202ENST00000421459 KPNA1P52294 538 aaPredicted RBP8.82□□□□□ -1
VIM-202ENST00000421459 SLC12A3P55017 1021 aa8.82□□□□□ -1
VIM-202ENST00000421459 CYP4F8P98187 520 aa8.82□□□□□ -1
VIM-202ENST00000421459 YWHAHQ04917 246 aaPredicted RBP8.82□□□□□ -1
VIM-202ENST00000421459 TNK2Q07912 1038 aa8.82□□□□□ -1
VIM-202ENST00000421459 STRN3Q13033 797 aa8.82□□□□□ -1
VIM-202ENST00000421459 DHX8Q14562 1220 aaKnown RBP8.82□□□□□ -1
VIM-202ENST00000421459 PON2Q15165 354 aa8.82□□□□□ -1
VIM-202ENST00000421459 CCDC6Q16204 474 aa8.82□□□□□ -1
VIM-202ENST00000421459 ENOX2Q16206 610 aaKnown RBP8.82□□□□□ -1
VIM-202ENST00000421459 DSTYKQ6XUX3 929 aa8.82□□□□□ -1
VIM-202ENST00000421459 ARID3BQ8IVW6 561 aaPredicted RBP8.82□□□□□ -1
VIM-202ENST00000421459 YAF2Q8IY57 180 aa8.82□□□□□ -1
VIM-202ENST00000421459 SYT2Q8N9I0 419 aaPredicted RBP8.82□□□□□ -1
VIM-202ENST00000421459 BEST2Q8NFU1 509 aa8.82□□□□□ -1
VIM-202ENST00000421459 CSGALNACT1Q8TDX6 532 aa8.82□□□□□ -1
VIM-202ENST00000421459 SPIRE2Q8WWL2 714 aa8.82□□□□□ -1
VIM-202ENST00000421459 LPIN3Q9BQK8 851 aa8.82□□□□□ -1
VIM-202ENST00000421459 IKZF4Q9H2S9 585 aa8.82□□□□□ -1
VIM-202ENST00000421459 TRPV4Q9HBA0 871 aa8.82□□□□□ -1
VIM-202ENST00000421459 TRPV5Q9NQA5 729 aa8.82□□□□□ -1
VIM-202ENST00000421459 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.82□□□□□ -1
VIM-202ENST00000421459 GTSE1Q9NYZ3 720 aa8.82□□□□□ -1
VIM-202ENST00000421459 GMEB2Q9UKD1 530 aa8.82□□□□□ -1
VIM-202ENST00000421459 CDV3Q9UKY7 258 aaKnown RBP8.82□□□□□ -1
VIM-202ENST00000421459 OTOGLQ3ZCN5 2332 aa8.82□□□□□ -1
VIM-202ENST00000421459 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.81□□□□□ -1
VIM-202ENST00000421459 VWA3AA6NCI4 1184 aa8.81□□□□□ -1
VIM-202ENST00000421459 SPECC1L-ADORA2AF8WAN1 911 aa8.81□□□□□ -1
VIM-202ENST00000421459 K7ESF4 209 aa8.81□□□□□ -1
VIM-202ENST00000421459 FAM189A1O60320 539 aa8.81□□□□□ -1
VIM-202ENST00000421459 PRAMEF12O95522 483 aa8.81□□□□□ -1
VIM-202ENST00000421459 CLTAP09496 248 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms