RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CLTCL1P53675 1640 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 ANKRD30BQ9BXX2 1392 aa5.73□□□□□ -1.49
VPS13A-207ENST00000419472 TMEM233B4DJY2 109 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 B4DLN1 442 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SART1O43290 800 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 OPHN1O60890 802 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 COBLO75128 1261 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 GJB3O75712 270 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 ALOX15P16050 662 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 TLE2Q04725 743 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 EXOSC9Q06265 439 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SNAPC2Q13487 334 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 FAM129CQ86XR2 697 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 CCHCR1Q8TD31 782 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 MRPL18Q9H0U6 180 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 PLSCR4Q9NRQ2 329 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 RBM12Q9NTZ6 932 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 PIH1D1Q9NWS0 290 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 DENND2AQ9ULE3 1009 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 PCDHB6Q9Y5E3 794 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 CHD2O14647 1828 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 F8W735 103 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 NFIBO00712 420 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 DGAT1O75907 488 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 USP1O94782 785 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 ANXA2P07355 339 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SLC3A2P08195 630 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 IL1R1P14778 569 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 GLB1P16278 677 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 RXRAP19793 462 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 HOXC13P31276 330 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 UBE3AQ05086 875 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 PPP2R5CQ13362 524 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SLC12A1Q13621 1099 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 Q6ZVL8 140 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 B4GALNT4Q76KP1 1039 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 MICU3Q86XE3 530 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SIAH1Q8IUQ4 282 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SP8Q8IXZ3 490 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SHISA5Q8N114 240 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 PCSK9Q8NBP7 692 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SCAMP5Q8TAC9 235 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 ATRIPQ8WXE1 791 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 TRIM54Q9BYV2 358 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 ZNF112Q9UJU3 913 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 CNPY2Q9Y2B0 182 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 STRCP1A6NGW2 1772 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SETD1AO15047 1707 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 RIMS2Q9UQ26 1411 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 H3BS24 57 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 FCHO1O14526 889 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SPTLC2O15270 562 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 DAPK3O43293 454 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 FAM155BO75949 473 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 URI1O94763 535 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 MALP21145 153 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 LTKP29376 864 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 ADSLP30566 484 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 HOXD13P35453 343 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 PHKA1P46020 1223 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 CDC42EP1Q00587 391 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 MROH9Q5TGP6 573 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 BEND5Q7L4P6 421 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 ZGPATQ8N5A5 531 aaKnown RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 RFFLQ8WZ73 363 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SNX21Q969T3 373 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 TMX3Q96JJ7 454 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 JMJD8Q96S16 334 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 RXFP1Q9HBX9 757 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 SRRDQ9UH36 339 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 DUSP13Q9UII6 198 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 AJAP1Q9UKB5 411 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-207ENST00000419472 TBC1D30Q9Y2I9 924 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 IFT172Q9UG01 1749 aa5.72□□□□□ -1.49
VPS13A-207ENST00000419472 PRAG1Q86YV5 1406 aa5.71□□□□□ -1.49
VPS13A-207ENST00000419472 PI4KAP2A4QPH2 592 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 MTA2O94776 668 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 KIF20AO95235 890 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 MMP14P50281 582 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 ARFIP2P53365 341 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 SLC13A2Q13183 592 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 IDI1Q13907 227 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 KIR3DS1Q14943 382 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 FLYWCH1Q4VC44 716 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 SLC22A25Q6T423 547 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 KLHL17Q6TDP4 642 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 LRSAM1Q6UWE0 723 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 RNF44Q7L0R7 432 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 CYP2W1Q8TAV3 490 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 HOXB13Q92826 284 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 NMD3Q96D46 503 aaKnown RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 SLF1Q9BQI6 1058 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 SMURF2Q9HAU4 748 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 SARS2Q9NP81 518 aaKnown RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 NSMCE4AQ9NXX6 385 aa5.71□□□□□ -1.5
VPS13A-207ENST00000419472 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-207ENST00000419472 ASH2LQ9UBL3 628 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms