RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CTCFP49711 727 aaPredicted RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 KIF5AQ12840 1032 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 MYO1EQ12965 1108 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 NFX1Q12986 1120 aaKnown RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PKN2Q16513 984 aaKnown RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 IFI16Q16666 785 aaKnown RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 SGSM1Q2NKQ1 1148 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 TRIM71Q2Q1W2 868 aaKnown RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 FAM26DQ5JW98 314 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 CCDC122Q5T0U0 273 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 C10orf76Q5T2E6 689 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PHLDB3Q6NSJ2 640 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 DPY19L2P1Q6NXN4 242 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PPP1R2P3Q6NXS1 205 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 TRIM72Q6ZMU5 477 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 LRRC8DQ7L1W4 858 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF677Q86XU0 584 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 TMEM192Q8IY95 271 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 LRRC52Q8N7C0 313 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 C1orf127Q8N9H9 656 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 SLC43A3Q8NBI5 491 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 RBBP8NLQ8NC74 664 aaPredicted RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 HELQQ8TDG4 1101 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 EPS8L1Q8TE68 723 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 SECISBP2LQ93073 1101 aaKnown RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 WNT8BQ93098 351 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 FAXDC2Q96IV6 333 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF333Q96JL9 665 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 FAM84AQ96KN4 292 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 KREMEN1Q96MU8 473 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PI4K2AQ9BTU6 479 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 FAM124BQ9H5Z6 455 aaPredicted RBP6.39□□□□□ -1.39
HMGB3-202ENST00000419110 CDHR5Q9HBB8 845 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 LZTFL1Q9NQ48 299 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 FAM105AQ9NUU6 356 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 SLC38A7Q9NVC3 462 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 SNTG2Q9NY99 539 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PARP2Q9UGN5 583 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 OGDHLQ9ULD0 1010 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 ST3GAL5Q9UNP4 418 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 IPPQ9Y573 584 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 CEP83Q9Y592 693 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 PCDHB4Q9Y5E5 795 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 NCANO14594 1321 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 GRIN2DO15399 1336 aa6.39□□□□□ -1.39
HMGB3-202ENST00000419110 VWA8A3KMH1 1905 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 PQBP1O60828 265 aaKnown RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 TACC1O75410 805 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 STAU1O95793 577 aaKnown RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 CD4P01730 458 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 CHRNA1P02708 482 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 CKBP12277 381 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ITGA4P13612 1032 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 KCNE1P15382 129 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 SELPP16109 830 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 GNA15P30679 374 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 HOXA11P31270 313 aaPredicted RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 CD52P31358 61 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 MLH1P40692 756 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 MAGEA1P43355 309 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 MYL6P60660 151 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ETF1P62495 437 aaKnown RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 RBP5P82980 135 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 PTK2Q05397 1052 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 GFPT1Q06210 699 aaPredicted RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 GRIK3Q13003 919 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 LPIN1Q14693 890 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 MTFR1Q15390 333 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 SLC10A6Q3KNW5 377 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 SV2CQ496J9 727 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 GLRA4Q5JXX5 417 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 UBXN11Q5T124 520 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 SPOPLQ6IQ16 392 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF662Q6ZS27 426 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 FAM43BQ6ZT52 329 aaPredicted RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 NUDT18Q6ZVK8 323 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF571Q7Z3V5 609 aaPredicted RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 FAM126BQ8IXS8 530 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 FAM71AQ8IYT1 594 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ANKLE1Q8NAG6 615 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 MSANTD4Q8NCY6 345 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 KIF18AQ8NI77 898 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 U2AF1L4Q8WU68 220 aaKnown RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 CTNNBL1Q8WYA6 563 aaPredicted RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF592Q92610 1267 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ZNF516Q92618 1163 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 APBB2Q92870 758 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 KAT5Q92993 513 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ARMC5Q96C12 935 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 PGBD4Q96DM1 585 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 TRIM11Q96F44 468 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 ARID3AQ99856 593 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 FTHL17Q9BXU8 183 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 GPR88Q9GZN0 384 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 TRPV6Q9H1D0 765 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 PDCL3Q9H2J4 239 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 VRTNQ9H8Y1 702 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 CYP3A43Q9HB55 503 aa6.38□□□□□ -1.39
HMGB3-202ENST00000419110 APOBEC3GQ9HC16 384 aaKnown RBP6.38□□□□□ -1.39
HMGB3-202ENST00000419110 DPP3Q9NY33 737 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms