RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 PGLYRP2Q96PD5 576 aa14.1□□□□□ -0.15
LINC00339-202ENST00000416769 MMTAG2Q9BU76 263 aaKnown RBP14.1□□□□□ -0.15
LINC00339-202ENST00000416769 TRMT61BQ9BVS5 477 aaKnown RBP14.1□□□□□ -0.15
LINC00339-202ENST00000416769 CCDC94Q9BW85 323 aaPredicted RBP14.1□□□□□ -0.15
LINC00339-202ENST00000416769 DNAJC25Q9H1X3 360 aa14.1□□□□□ -0.15
LINC00339-202ENST00000416769 ZSCAN16Q9H4T2 348 aaPredicted RBP14.1□□□□□ -0.15
LINC00339-202ENST00000416769 LMAN1LQ9HAT1 526 aa14.1□□□□□ -0.15
LINC00339-202ENST00000416769 ZFP14Q9HCL3 533 aa14.1□□□□□ -0.15
LINC00339-202ENST00000416769 ZNF334Q9HCZ1 680 aaPredicted RBP14.1□□□□□ -0.15
LINC00339-202ENST00000416769 CNTN3Q9P232 1028 aa14.1□□□□□ -0.15
LINC00339-202ENST00000416769 PIAS3Q9Y6X2 628 aa14.1□□□□□ -0.15
LINC00339-202ENST00000416769 RALGAPA1Q6GYQ0 2036 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 PPEF2O14830 753 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 TRAPPC3O43617 180 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 SOAT2O75908 522 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 ZSCAN22P10073 491 aaPredicted RBP14.09□□□□□ -0.15
LINC00339-202ENST00000416769 KCNE1P15382 129 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 CCNE1P24864 410 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 MCM4P33991 863 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 FXR2P51116 673 aaKnown RBP eCLIP14.09□□□□□ -0.15
LINC00339-202ENST00000416769 YARSP54577 528 aaKnown RBP14.09□□□□□ -0.15
LINC00339-202ENST00000416769 GNL2Q13823 731 aaKnown RBP14.09□□□□□ -0.15
LINC00339-202ENST00000416769 SLC10A6Q3KNW5 377 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 MCTP1Q6DN14 999 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 TXNDC11Q6PKC3 985 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 FAM3CQ92520 227 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 DDX12PQ92771 950 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 DNASE1L2Q92874 299 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 SMARCD2Q92925 531 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 ZFYVE19Q96K21 471 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 SUSD3Q96L08 255 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 LRRC3Q9BY71 257 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 MRPL4Q9BYD3 311 aaKnown RBP14.09□□□□□ -0.15
LINC00339-202ENST00000416769 ANKFY1Q9P2R3 1169 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 LRWD1Q9UFC0 647 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 YIPF1Q9Y548 306 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 NUB1Q9Y5A7 615 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 PCDHB6Q9Y5E3 794 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 KIF26AQ9ULI4 1882 aaPredicted RBP14.09□□□□□ -0.15
LINC00339-202ENST00000416769 MYH11P35749 1972 aa14.09□□□□□ -0.15
LINC00339-202ENST00000416769 NPHP3-ACAD11A0A0J9YXS1 232 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 SLC38A8A6NNN8 435 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 HEPACAM2A8MVW5 462 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 CHURC1-FNTBB4DL54 471 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 SYN3O14994 580 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 CXCL8P10145 99 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 CHRNB1P11230 501 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 MAGEA9P43362 315 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 FNTBP49356 437 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 HAUS3Q68CZ6 603 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 HEATR6Q6AI08 1181 aaKnown RBP14.08□□□□□ -0.16
LINC00339-202ENST00000416769 RINT1Q6NUQ1 792 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 MPZL3Q6UWV2 235 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 PRR23BQ6ZRT6 265 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 TMC8Q8IU68 726 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 ACAP3Q96P50 834 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 TMEM209Q96SK2 561 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 PLIN2Q99541 437 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 TCHPQ9BT92 498 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 KMT5AQ9NQR1 393 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 CHMP5Q9NZZ3 219 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 CDV3Q9UKY7 258 aaKnown RBP14.08□□□□□ -0.16
LINC00339-202ENST00000416769 ZDHHC9Q9Y397 364 aa14.08□□□□□ -0.16
LINC00339-202ENST00000416769 A0A1W2PRU2 124 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 HRO43593 1189 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 GDF9O60383 454 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 MCF2P10911 925 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 CPB1P15086 417 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 PSMC3P17980 439 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 TNFSF9P41273 254 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 PTGDRQ13258 359 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 DMP1Q13316 513 aaPredicted RBP14.07□□□□□ -0.16
LINC00339-202ENST00000416769 PKP1Q13835 747 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 ZRSR1Q15695 479 aaKnown RBP14.07□□□□□ -0.16
LINC00339-202ENST00000416769 ZNF280DQ6N043 979 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 C1orf186Q6ZWK4 172 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 BRAPQ7Z569 592 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 IGSF22Q8N9C0 903 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 NELL2Q99435 816 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 MKNK1Q9BUB5 465 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 TOPORSQ9NS56 1045 aaPredicted RBP14.07□□□□□ -0.16
LINC00339-202ENST00000416769 SLC38A7Q9NVC3 462 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 AFF4Q9UHB7 1163 aaKnown RBP14.07□□□□□ -0.16
LINC00339-202ENST00000416769 SLC27A5Q9Y2P5 690 aa14.07□□□□□ -0.16
LINC00339-202ENST00000416769 MRPS17Q9Y2R5 130 aaKnown RBP14.07□□□□□ -0.16
LINC00339-202ENST00000416769 TSC2P49815 1807 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 USP24Q9UPU5 2620 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 H7C4K7 107 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 NCAM2O15394 837 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 F13A1P00488 732 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 EPHA5P54756 1037 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 LMNB2Q03252 620 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 RESTQ13127 1097 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 CYP4A22Q5TCH4 519 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 PKN3Q6P5Z2 889 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 RTL10Q7L3V2 364 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 LRRC15Q8TF66 581 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 ZNF512Q96ME7 567 aaPredicted RBP14.06□□□□□ -0.16
LINC00339-202ENST00000416769 PNMA5Q96PV4 448 aa14.06□□□□□ -0.16
LINC00339-202ENST00000416769 SMG9Q9H0W8 520 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms