RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ITGBL1O95965 494 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ZNF131P52739 623 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 CCL14Q16627 93 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 IFT81Q8WYA0 676 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 SMC6Q96SB8 1091 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 TSPYL2Q9H2G4 693 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-211ENST00000413186 PARVAQ9NVD7 372 aa9.04□□□□□ -0.96
SYNE1-211ENST00000413186 ALDH2P05091 517 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 CAPN2P17655 700 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 EDNRBP24530 442 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 PON1P27169 355 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 GJA5P36382 358 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 GHRHRQ02643 423 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 FBXO47Q5MNV8 452 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 BZW1Q7L1Q6 419 aaKnown RBP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 RFFLQ8WZ73 363 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 TSNARE1Q96NA8 513 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 ACO2Q99798 780 aaKnown RBP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 WDR70Q9NW82 654 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 IP6K2Q9UHH9 426 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 UMODL1Q5DID0 1318 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 DHX15O43143 795 aaKnown RBP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 DARSP14868 501 aaKnown RBP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 LHX1P48742 406 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 VEGFBP49765 207 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 POU5F1BQ06416 359 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 NCAPHQ15003 741 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 CST9Q5W186 159 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 MED15Q96RN5 788 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 VPS18Q9P253 973 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 SLC4A1P02730 911 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 RALAP11233 206 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 ARL2P36404 184 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 RWDD2BP57060 319 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 KLHL7Q8IXQ5 586 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 PXYLP1Q8TE99 480 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 SLC35C1Q96A29 364 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 UVRAGQ9P2Y5 699 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 PLAGL2Q9UPG8 496 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 FAN1Q9Y2M0 1017 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 ADGRG1Q9Y653 693 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 FAM170AA1A519 330 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 KRT1P04264 644 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 FGFR4P22455 802 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 FXR1P51114 621 aaKnown RBP eCLIP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 GFPT1Q06210 699 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 TAS1R2Q8TE23 839 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 RBM41Q96IZ5 413 aaKnown RBP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 TSEN34Q9BSV6 310 aaKnown RBP9.03□□□□□ -0.96
SYNE1-211ENST00000413186 AGPAT5Q9NUQ2 364 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 TXNDC16Q9P2K2 825 aa9.03□□□□□ -0.96
SYNE1-211ENST00000413186 ANKRD63C9JTQ0 380 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 PGRMC1O00264 195 aaKnown RBP9.02□□□□□ -0.96
SYNE1-211ENST00000413186 VIMP08670 466 aaKnown RBP9.02□□□□□ -0.96
SYNE1-211ENST00000413186 KRT7P08729 469 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 WEE2P0C1S8 567 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 VDRP11473 427 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 SNX17Q15036 470 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 NFE2Q16621 373 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-211ENST00000413186 C6orf163Q5TEZ5 329 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 APLFQ8IW19 511 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-211ENST00000413186 ZNF784Q8NCA9 323 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-211ENST00000413186 BBOF1Q8ND07 529 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 ZNF564Q8TBZ8 553 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-211ENST00000413186 RMDN2Q96LZ7 410 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 PI4K2AQ9BTU6 479 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 CDT1Q9H211 546 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 SLITRK6Q9H5Y7 841 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 CPSF3Q9UKF6 684 aaKnown RBP9.02□□□□□ -0.96
SYNE1-211ENST00000413186 PCDHB12Q9Y5F1 795 aa9.02□□□□□ -0.96
SYNE1-211ENST00000413186 CYB561D2O14569 222 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 RECQL4O94761 1208 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 MOCS3O95396 460 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 PDGFRBP09619 1106 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 ACLYP53396 1101 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 PMS1P54277 932 aaKnown RBP9.02□□□□□ -0.97
SYNE1-211ENST00000413186 TFDP2Q14188 446 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 NFIL3Q16649 462 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 FAM102AQ5T9C2 384 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-211ENST00000413186 BTBD8Q5XKL5 378 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 RFX6Q8HWS3 928 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 KCTD6Q8NC69 237 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 TMEM117Q9H0C3 514 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 PIDD1Q9HB75 910 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 ARHGAP28Q9P2N2 729 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 POLIQ9UNA4 740 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 ST3GAL5Q9UNP4 418 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 LRRD1A4D1F6 860 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 LRRC10BA6NIK2 292 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 PPFIA2O75334 1257 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 SNAI1O95863 264 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-211ENST00000413186 GYPCP04921 128 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 SELPP16109 830 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 GRIK1P39086 918 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 CASP5P51878 434 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 GCNT1Q02742 428 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 SPIRE1Q08AE8 756 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 PTK7Q13308 1070 aa9.02□□□□□ -0.97
SYNE1-211ENST00000413186 GLE1Q53GS7 698 aaKnown RBP9.02□□□□□ -0.97
SYNE1-211ENST00000413186 KIAA0319LQ8IZA0 1049 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms