RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 CGRRF1Q99675 332 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 TRIM56Q9BRZ2 755 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 TSSK1BQ9BXA7 367 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 TM6SF1Q9BZW5 370 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 JMJD4Q9H9V9 463 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 PACSIN2Q9UNF0 486 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 SNCAIPQ9Y6H5 919 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 EIF3DO15371 548 aaKnown RBP eCLIP7.7□□□□□ -1.186e-6■■■■□ 21
SCN9A-202ENST00000409435 SOX5P35711 763 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ST13P50502 369 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 GLRA4Q5JXX5 417 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ERICH1Q86X53 443 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ZSCAN1Q8NBB4 408 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 PPP4R1Q8TF05 950 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 EFHD1Q9BUP0 239 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 MRPS26Q9BYN8 205 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 A0A087WZ62 844 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 RGS16O15492 202 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 GNL1P36915 607 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 KLHL30Q0D2K2 578 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 SLC30A9Q6PML9 568 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 XXYLT1Q8NBI6 393 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 MAFAQ8NHW3 353 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ALKBH8Q96BT7 664 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 FDXACB1Q9BRP7 624 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 GTPBP2Q9BX10 602 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 EMILIN3Q9NT22 766 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 SYNRGQ9UMZ2 1314 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 CYB561D2O14569 222 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 PAX3P23760 479 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 TBXAS1P24557 533 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 DNM1Q05193 864 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 ZNF177Q13360 481 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 POLD3Q15054 466 aaPredicted RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 SFMBT2Q5VUG0 894 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 TDHQ8IZJ6 230 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 P3H4Q92791 437 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 IQCDQ96DY2 449 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 SH3GL1Q99961 368 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 PDCD2LQ9BRP1 358 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 SEL1LQ9UBV2 794 aa7.7□□□□□ -1.18
SCN9A-202ENST00000409435 PARP4Q9UKK3 1724 aaKnown RBP7.7□□□□□ -1.18
SCN9A-202ENST00000409435 H7C0C1 242 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 MAGEC1O60732 1142 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CYP21A2P08686 494 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 KRT15P19012 456 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 ATP5OP48047 213 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 MRPS5P82675 430 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PLA2G4FQ68DD2 849 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 LRRC69Q6ZNQ3 347 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 MTSS1LQ765P7 747 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 JAMLQ86YT9 394 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 ATP6V0D2Q8N8Y2 350 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CPB2Q96IY4 423 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 VPS50Q96JG6 964 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 TUBB6Q9BUF5 446 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 NUP58Q9BVL2 599 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CXorf56Q9H5V9 222 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 C10orf88Q9H8K7 445 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 ANKEF1Q9NU02 776 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 HMGB3O15347 200 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 ATP5BP06576 529 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 OXCT1P55809 520 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 TRIM14Q14142 442 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PGM5Q15124 567 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 BZW1Q7L1Q6 419 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CHSY1Q86X52 802 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CARNMT1Q8N4J0 409 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PIP4K2CQ8TBX8 421 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 MAIP1Q8WWC4 291 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 RAD9AQ99638 391 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PCDHB11Q9Y5F2 797 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 GOLGA8QA0A0J9YX86 632 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 GOLGA8OA6NCC3 632 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 AKR1B15C9JRZ8 316 aaPredicted RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 GOLGA8NF8WBI6 632 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 TPD52L2O43399 206 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 NBNO60934 754 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 ALPPL2P10696 532 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 EEF1B2P24534 225 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PMLP29590 882 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 MAPK9P45984 424 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 NRIP1P48552 1158 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 LHX1P48742 406 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 LRRC41Q15345 812 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 PSMD5Q16401 504 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CDO1Q16878 200 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 OVOS1Q6IE37 1185 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 SLC30A10Q6XR72 485 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 TRMT11Q7Z4G4 463 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 TRIM58Q8NG06 486 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 A0A1W2PQ45 241 aaPredicted RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 A0A1W2PQY0 241 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 GTPBP10A4D1E9 387 aaKnown RBP7.69□□□□□ -1.18
SCN9A-202ENST00000409435 M0QYT0 321 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 CHGBP05060 677 aa7.69□□□□□ -1.18
SCN9A-202ENST00000409435 MYL1P05976 194 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms