RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 NT5DC4Q86YG4 428 aa20.23■□□□□ 0.83
USP39-202ENST00000409025 PASD1Q8IV76 773 aa20.23■□□□□ 0.83
USP39-202ENST00000409025 SMC1BQ8NDV3 1235 aa20.23■□□□□ 0.83
USP39-202ENST00000409025 DNAJB3Q8WWF6 145 aa20.23■□□□□ 0.83
USP39-202ENST00000409025 CDHR5Q9HBB8 845 aa20.23■□□□□ 0.83
USP39-202ENST00000409025 TTC7AQ9ULT0 858 aaPredicted RBP20.23■□□□□ 0.83
USP39-202ENST00000409025 C2CD2Q9Y426 696 aa20.23■□□□□ 0.83
USP39-202ENST00000409025 NPTXRO95502 500 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 ALDH1A1P00352 501 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 CFHP08603 1231 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 GNAT1P11488 350 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 SLC27A1Q6PCB7 646 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 MON1BQ7L1V2 547 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 VCPIP1Q96JH7 1222 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 KRT12Q99456 494 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 FUT8Q9BYC5 575 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 WNT8AQ9H1J5 351 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 FAM53CQ9NYF3 392 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 POLIQ9UNA4 740 aa20.22■□□□□ 0.83
USP39-202ENST00000409025 TREHO43280 583 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 KPNA6O60684 536 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 ZMYND10O75800 440 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 HOXA11P31270 313 aaPredicted RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 PURAQ00577 322 aaKnown RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 CLUL1Q15846 466 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 WDR72Q3MJ13 1102 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 NOTUMQ6P988 496 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 CCNI2Q6ZMN8 369 aaPredicted RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 HDXQ7Z353 690 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 PHF13Q86YI8 300 aaPredicted RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 C7orf31Q8N865 590 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 TRPV1Q8NER1 839 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 HDAC7Q8WUI4 952 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 BCO2Q9BYV7 579 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 GPBP1L1Q9HC44 474 aaPredicted RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 ADAM22Q9P0K1 906 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 STIM2Q9P246 746 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 DMGDHQ9UI17 866 aaKnown RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 CCDC188H7C350 402 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 EIF4BP23588 611 aaKnown RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 RRM1P23921 792 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 SSTR3P32745 418 aaPredicted RBP20.21■□□□□ 0.83
USP39-202ENST00000409025 SLC7A5Q01650 507 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 ZNF394Q53GI3 561 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 BTBD6Q96KE9 485 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 ZSWIM1Q9BR11 485 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 ITGA11Q9UKX5 1188 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 L1RE1Q9UN81 338 aa20.21■□□□□ 0.83
USP39-202ENST00000409025 KRIT1O00522 736 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 SPOPO43791 374 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 C6orf222P0C671 652 aaPredicted RBP20.2■□□□□ 0.82
USP39-202ENST00000409025 P4HA1P13674 534 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 AXLP30530 894 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 ZNF200P98182 395 aaPredicted RBP20.2■□□□□ 0.82
USP39-202ENST00000409025 DCAF12L1Q5VU92 463 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 KRT222Q8N1A0 295 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 CXorf38Q8TB03 319 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 NAP1L3Q99457 506 aaPredicted RBP20.2■□□□□ 0.82
USP39-202ENST00000409025 C11orf70Q9BRQ4 267 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 ARHGAP39Q9C0H5 1083 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 VRTNQ9H8Y1 702 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 PLEKHA5Q9HAU0 1116 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 DPP3Q9NY33 737 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 ANAPC7Q9UJX3 599 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 CITO14578 2027 aa20.2■□□□□ 0.82
USP39-202ENST00000409025 SASH3O75995 380 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 LSM8O95777 96 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 CYBAP13498 195 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 BRD2P25440 801 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 POLR2BP30876 1174 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 MRPS25P82663 173 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 RBP5P82980 135 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 LACTBP83111 547 aaPredicted RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 C1QBPQ07021 282 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 KLHL7Q8IXQ5 586 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 NME8Q8N427 588 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 ALG3Q92685 438 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 KIF12Q96FN5 646 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 RNPC3Q96LT9 517 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 AP1M1Q9BXS5 423 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 GABRQQ9UN88 632 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 AGAP1Q9UPQ3 857 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 CCDC66A2RUB6 948 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 FGGP02679 453 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 CTNNA2P26232 953 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 YARSP54577 528 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 GJA9P57773 515 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 SNX17Q15036 470 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 CYP4F22Q6NT55 531 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 TRIB2Q92519 343 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 CD101Q93033 1021 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 HPDLQ96IR7 371 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 CYP3A43Q9HB55 503 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 MRPL47Q9HD33 250 aaKnown RBP20.19■□□□□ 0.82
USP39-202ENST00000409025 SNTG2Q9NY99 539 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 DERAQ9Y315 318 aa20.19■□□□□ 0.82
USP39-202ENST00000409025 HOXC8P31273 242 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 RAP1GAPP47736 663 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 FLT3LGP49771 235 aa20.18■□□□□ 0.82
USP39-202ENST00000409025 GNASQ5JWF2 1037 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms