RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 LILRA6Q6PI73 481 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 SYCE2Q6PIF2 218 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 ELMSAN1Q6PJG2 1045 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 GLYCTKQ8IVS8 523 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 ADSSL1Q8N142 457 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 LRRC52Q8N7C0 313 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 OR5B17Q8NGF7 314 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 CXorf38Q8TB03 319 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 HDAC7Q8WUI4 952 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 CCDC127Q96BQ5 260 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 FRMD4BQ9Y2L6 1034 aa23.44■■□□□ 1.34
CLN3-207ENST00000395653 ARHGEF37A1IGU5 675 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 H7C4K7 107 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 MAPK13O15264 365 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 TGM5O43548 720 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 TNNI1P19237 187 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 TYMPP19971 482 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 PPP1R2P41236 205 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 CASP4P49662 377 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 RAB33AQ14088 237 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 SV2CQ496J9 727 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 SLC8B1Q6J4K2 584 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 ZNF280DQ6N043 979 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 PALB2Q86YC2 1186 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 CSGALNACT2Q8N6G5 542 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 SENP8Q96LD8 212 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 GZF1Q9H116 711 aaPredicted RBP23.43■■□□□ 1.34
CLN3-207ENST00000395653 AGAP1Q9UPQ3 857 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 CDY1Q9Y6F8 540 aa23.43■■□□□ 1.34
CLN3-207ENST00000395653 GOLGA6L22H0YM25 854 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 TBC1D4O60343 1298 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 ODC1P11926 461 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 PLXNA3P51805 1871 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 RBP5P82980 135 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 STIM1Q13586 685 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 MORC3Q14149 939 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 CEP135Q66GS9 1140 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 RSPO2Q6UXX9 243 aaPredicted RBP23.42■■□□□ 1.34
CLN3-207ENST00000395653 PARD3BQ8TEW8 1205 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 FAM84AQ96KN4 292 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 S1PR5Q9H228 398 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 PLEKHA4Q9H4M7 779 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 MAN1C1Q9NR34 630 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 SIX4Q9UIU6 781 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 VCANP13611 3396 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 A0A0C4DFX4 3053 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 KPNA7A9QM74 516 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 ADAM12O43184 909 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 OAZ2O95190 189 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 IL9P15248 144 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 OR1D2P34982 312 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 CLDN10P78369 228 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 YWHAHQ04917 246 aaPredicted RBP23.42■■□□□ 1.34
CLN3-207ENST00000395653 ADAM9Q13443 819 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 SMAD2Q15796 467 aaKnown RBP23.42■■□□□ 1.34
CLN3-207ENST00000395653 CAMK4Q16566 473 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 ISM2Q6H9L7 571 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 TRIML1Q8N9V2 468 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 PLEKHO2Q8TD55 490 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 BORCS6Q96GS4 357 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 POP1Q99575 1024 aaKnown RBP23.42■■□□□ 1.34
CLN3-207ENST00000395653 OXCT2Q9BYC2 517 aaPredicted RBP23.42■■□□□ 1.34
CLN3-207ENST00000395653 CLSTN2Q9H4D0 955 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 SFXN1Q9H9B4 322 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 KIAA1468Q9P260 1216 aa23.42■■□□□ 1.34
CLN3-207ENST00000395653 R3HCC1Q9Y3T6 440 aaKnown RBP23.42■■□□□ 1.34
CLN3-207ENST00000395653 SCN1AP35498 2009 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 PSMA7O14818 248 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 CYP11A1P05108 521 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 KRT19P08727 400 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 BMP6P22004 513 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 AP3M2P53677 418 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 LRRC63Q05C16 580 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 ITIH3Q06033 890 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 CTXN3Q4LDR2 81 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 TRAPPC11Q7Z392 1133 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 USP37Q86T82 979 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 TMC2Q8TDI7 906 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 DHTKD1Q96HY7 919 aaPredicted RBP23.41■■□□□ 1.34
CLN3-207ENST00000395653 TSG101Q99816 390 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 ADAM7Q9H2U9 754 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 FBXL5Q9UKA1 691 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 FBXW11Q9UKB1 542 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 DSEQ9UL01 958 aa23.41■■□□□ 1.34
CLN3-207ENST00000395653 TIMM13Q9Y5L4 95 aaPredicted RBP23.41■■□□□ 1.34
CLN3-207ENST00000395653 AKAP3O75969 853 aa23.4■■□□□ 1.34
CLN3-207ENST00000395653 PSMC2P35998 433 aaKnown RBP23.4■■□□□ 1.34
CLN3-207ENST00000395653 SUSD6Q92537 303 aa23.4■■□□□ 1.34
CLN3-207ENST00000395653 USP15Q9Y4E8 981 aaPredicted RBP23.4■■□□□ 1.34
CLN3-207ENST00000395653 SPDYE4A6NLX3 237 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 LRRIQ3A6PVS8 624 aaPredicted RBP23.39■■□□□ 1.33
CLN3-207ENST00000395653 BIN1O00499 593 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 CYB561D2O14569 222 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 CD44P16070 742 aaKnown RBP23.39■■□□□ 1.33
CLN3-207ENST00000395653 CCNE1P24864 410 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 ROR1Q01973 937 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 ENPEPQ07075 957 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 MYO1EQ12965 1108 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 OVOS1Q6IE37 1185 aa23.39■■□□□ 1.33
CLN3-207ENST00000395653 CES5AQ6NT32 575 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms