RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 LPPQ93052 612 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 DDX27Q96GQ7 796 aaKnown RBP10.97□□□□□ -0.65
VPS53-202ENST00000389040 SNX27Q96L92 541 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 GAD1Q99259 594 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 MKNK1Q9BUB5 465 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 HAPLN2Q9GZV7 340 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 NLRC4Q9NPP4 1024 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 TBC1D13Q9NVG8 400 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 HSPBP1Q9NZL4 362 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 USP20Q9Y2K6 914 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 PCDHA13Q9Y5I0 950 aa10.97□□□□□ -0.65
VPS53-202ENST00000389040 SSU72P8A0A1W2PR75 194 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 LINC01553A4QN01 128 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 GRXCR1A8MXD5 290 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 CA3P07451 260 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 RABGGTBP53611 331 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 MCCD1P59942 119 aaPredicted RBP10.96□□□□□ -0.65
VPS53-202ENST00000389040 AMPD2Q01433 879 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 TAP1Q03518 808 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 UBE3AQ05086 875 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 DSC1Q08554 894 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 TUSC3Q13454 348 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 TEX35Q5T0J7 233 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 PPP2R2DQ66LE6 453 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 HGSNATQ68CP4 663 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 FAM117BQ6P1L5 589 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 GPR161Q8N6U8 529 aaKnown RBP10.96□□□□□ -0.65
VPS53-202ENST00000389040 RABGGTAQ92696 567 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 CBWD1Q9BRT8 395 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 GANQ9H2C0 597 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 ARGLU1Q9NWB6 273 aaPredicted RBP10.96□□□□□ -0.65
VPS53-202ENST00000389040 FRMD4BQ9Y2L6 1034 aa10.96□□□□□ -0.65
VPS53-202ENST00000389040 MICAL3Q7RTP6 2002 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 SMIM28A0A1B0GU29 152 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 CLIC2O15247 247 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 EXOC3O60645 756 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 SERPING1P05155 500 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 CASP4P49662 377 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 AP3M2P53677 418 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 APBA1Q02410 837 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 ZBTB6Q15916 424 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 ENOX2Q16206 610 aaKnown RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 SNRNP35Q16560 246 aaKnown RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 ASTE1Q2TB18 679 aaPredicted RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 DCAF17Q5H9S7 520 aaPredicted RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 CRELD2Q6UXH1 353 aaPredicted RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 TMCO2Q7Z6W1 182 aaPredicted RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 BRSK2Q8IWQ3 736 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 SECISBP2LQ93073 1101 aaKnown RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 SLC35C1Q96A29 364 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 ZFP42Q96MM3 310 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 PPP1R10Q96QC0 940 aaKnown RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 FAM213AQ9BRX8 229 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 C11orf84Q9BUA3 381 aaPredicted RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 APOL6Q9BWW8 343 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 ZNF576Q9H609 170 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 CWH43Q9H720 699 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 PLCB1Q9NQ66 1216 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 PUF60Q9UHX1 559 aaKnown RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 MYO6Q9UM54 1294 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 LZTS1Q9Y250 596 aa10.96□□□□□ -0.66
VPS53-202ENST00000389040 YBX2Q9Y2T7 364 aaKnown RBP10.96□□□□□ -0.66
VPS53-202ENST00000389040 MACROD2A1Z1Q3 448 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 MEIS3P2A8K0S8 358 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 PTGESO14684 152 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 LINC00271P0C7V0 271 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 HARSP12081 509 aaKnown RBP10.95□□□□□ -0.66
VPS53-202ENST00000389040 PSMC2P35998 433 aaKnown RBP10.95□□□□□ -0.66
VPS53-202ENST00000389040 PBX2P40425 430 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 ACOT2P49753 483 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 CLCN6P51797 869 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 KRT17Q04695 432 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 TRAPPC11Q7Z392 1133 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 GPIHBP1Q8IV16 184 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 TMEM192Q8IY95 271 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 TXLNBQ8N3L3 684 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 CEP120Q8N960 986 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 BORCS6Q96GS4 357 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 MFSD14AQ96MC6 490 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 ZNF558Q96NG5 402 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 RBAKQ9NYW8 714 aaPredicted RBP10.95□□□□□ -0.66
VPS53-202ENST00000389040 LMCD1Q9NZU5 365 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 UBQLN1Q9UMX0 589 aaKnown RBP10.95□□□□□ -0.66
VPS53-202ENST00000389040 INPP5FQ9Y2H2 1132 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 MRPL42Q9Y6G3 142 aaKnown RBP10.95□□□□□ -0.66
VPS53-202ENST00000389040 DUSP10Q9Y6W6 482 aa10.95□□□□□ -0.66
VPS53-202ENST00000389040 TMEM189-UBE2V1I3L0A0 370 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 RBAK-RBAKDNI3L0D1 243 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 ENC1O14682 589 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 POMCP01189 267 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 ATP1A1P05023 1023 aaKnown RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 CXCL8P10145 99 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 SCNN1GP51170 649 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 OSTNP61366 133 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 TUBB4BP68371 445 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 CLDN10P78369 228 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 PLCB3Q01970 1234 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 GFPT1Q06210 699 aaPredicted RBP10.94□□□□□ -0.66
VPS53-202ENST00000389040 RAPGEF1Q13905 1077 aa10.94□□□□□ -0.66
VPS53-202ENST00000389040 BMS1Q14692 1282 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms