RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 NSL1Q96IY1 281 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 TRIM39Q9HCM9 518 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 MYO3BQ8WXR4 1341 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 TCN1P20061 433 aaPredicted RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 VEPH1Q14D04 833 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 FBXW10Q5XX13 1052 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 RMND5AQ9H871 391 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ZC3H4Q9UPT8 1303 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 A8MXQ7 604 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 CHI3L1P36222 383 aaPredicted RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 RCN1Q15293 331 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 KYNUQ16719 465 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 HIST2H2ACQ16777 129 aaPredicted RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 AGBL2Q5U5Z8 902 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 HIST2H2AA3Q6FI13 130 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 C3orf20Q8ND61 904 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 RNPC3Q96LT9 517 aaKnown RBP12.16□□□□□ -0.46
VPS13A-205ENST00000376636 ARMC7Q9H6L4 198 aa12.16□□□□□ -0.46
VPS13A-205ENST00000376636 PRPF3O43395 683 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 YWHABP31946 246 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 RXRGP48443 463 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 PEX3P56589 373 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 PTK6Q13882 451 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 THOC7Q6I9Y2 204 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 RCOR2Q8IZ40 523 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 SEC16BQ96JE7 1060 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 PIDD1Q9HB75 910 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 CSPG5O95196 566 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 CLPTM1O96005 669 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 DDR2Q16832 855 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 TAF8Q7Z7C8 310 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 SNRNP27Q8WVK2 155 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 ZFRQ96KR1 1074 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 EYA1Q99502 592 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 STAT5AP42229 794 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 STAT5BP51692 787 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 ARHGEF7Q14155 803 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 ZNF579Q8NAF0 562 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 INTS13Q9NVM9 706 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 MYH11P35749 1972 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 FBLN1P23142 703 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 MAPK1P28482 360 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 PTH1RQ03431 593 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 KIAA0825Q8IV33 1275 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 STK39Q9UEW8 545 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 XPO7Q9UIA9 1087 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 IFNA14P01570 189 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 SPRP35270 261 aaPredicted RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 BCAP31P51572 246 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 CACNB1Q02641 598 aaPredicted RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 CYP51A1Q16850 503 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 MIGA2Q7L4E1 593 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 CYP2D7A0A087X1C5 515 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 GRAMD1CQ8IYS0 662 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 RIN3Q8TB24 985 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 UBE2OQ9C0C9 1292 aaKnown RBP12.15□□□□□ -0.46
VPS13A-205ENST00000376636 F8W810 466 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 TMC4Q7Z404 712 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 IFNEQ86WN2 208 aa12.15□□□□□ -0.46
VPS13A-205ENST00000376636 GCP02774 474 aa12.15□□□□□ -0.47
VPS13A-205ENST00000376636 SARSP49591 514 aaKnown RBP12.15□□□□□ -0.47
VPS13A-205ENST00000376636 ALFQ53S48 1182 aa12.15□□□□□ -0.47
VPS13A-205ENST00000376636 CHAMP1Q96JM3 812 aa12.15□□□□□ -0.47
VPS13A-205ENST00000376636 GTF2A1LQ9UNN4 478 aa12.15□□□□□ -0.47
VPS13A-205ENST00000376636 ABCC4O15439 1325 aa12.15□□□□□ -0.47
VPS13A-205ENST00000376636 POTEIP0CG38 1075 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF23P17027 643 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 FAM83EQ2M2I3 478 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 FBXO42Q6P3S6 717 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 FAM160B2Q86V87 743 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 FHOD1Q9Y613 1164 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF804BA4D1E1 1349 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 E9PBE3 544 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 TAF4O00268 1085 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 KCNH2Q12809 1159 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 GRID1Q9ULK0 1009 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 HSMCR30P0CW71 290 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 FEN1P39748 380 aaKnown RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 YWHAZP63104 245 aaKnown RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 H3BMM5 538 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 SCNN1DP51172 638 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 VPS33AQ96AX1 596 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 DOLKQ9UPQ8 538 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 VAMP7P51809 220 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 POU4F1Q01851 419 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 CHRNB3Q05901 458 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 KRT24Q2M2I5 525 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 GSPT2Q8IYD1 628 aaKnown RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 SH3GLB1Q9Y371 365 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 YEATS2Q9ULM3 1422 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 GUCY1B2O75343 617 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 CIAO1O76071 339 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 ST8SIA6P61647 398 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 BTKQ06187 659 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 MTMR1Q13613 665 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 REXO4Q9GZR2 422 aaKnown RBP12.14□□□□□ -0.47
VPS13A-205ENST00000376636 MANSC1Q9H8J5 431 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 BTG4Q9NY30 223 aa12.14□□□□□ -0.47
VPS13A-205ENST00000376636 ITIH2P19823 946 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms