RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 VARS2Q5ST30 1063 aaKnown RBP16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 GPR65Q8IYL9 337 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 TRIML1Q8N9V2 468 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 BORCS6Q96GS4 357 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 FNIP2Q9P278 1114 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 ITGA11Q9UKX5 1188 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 PCDHB8Q9UN66 801 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 CTNND2Q9UQB3 1225 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 FRMD4BQ9Y2L6 1034 aa16.27■□□□□ 0.2
SMPDL3A-201ENST00000368440 PSMA7O14818 248 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 SYN3O14994 580 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 KRT19P08727 400 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 TAF6P49848 677 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 KCNQ1P51787 676 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 STIM1Q13586 685 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 GSE1Q14687 1217 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 DUOXA2Q1HG44 320 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 C1orf220Q5T0J3 134 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 DSTYKQ6XUX3 929 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 TRAPPC11Q7Z392 1133 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 PALB2Q86YC2 1186 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 ZC3H3Q8IXZ2 948 aaKnown RBP16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 DHTKD1Q96HY7 919 aaPredicted RBP16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 MSLNLQ96KJ4 702 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 SENP8Q96LD8 212 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 MTRRQ9UBK8 725 aa16.27■□□□□ 0.19
SMPDL3A-201ENST00000368440 MTCL1Q9Y4B5 1905 aaKnown RBP16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 TNNC2P02585 160 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 ADH1AP07327 375 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 RPL13P26373 211 aaKnown RBP16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 TMEM184AQ6ZMB5 413 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 FAM186BQ8IYM0 893 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 FEZF2Q8TBJ5 459 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 NELFBQ8WX92 580 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 ZNF560Q96MR9 790 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 TSG101Q99816 390 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 DUSP9Q99956 384 aaKnown RBP16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 TMEM63CQ9P1W3 806 aa16.26■□□□□ 0.19
SMPDL3A-201ENST00000368440 MAPK13O15264 365 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 SPATA31D3P0C874 917 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 TRIM49P0CI25 452 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 TRIM49CP0CI26 452 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 STX17P56962 302 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 CLDN10P78369 228 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 LRRC63Q05C16 580 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 MRPL58Q14197 206 aaKnown RBP16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 TTI2Q6NXR4 508 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 SPATA31D4Q6ZUB0 917 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 ANKS3Q6ZW76 656 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 APOL5Q9BWW9 433 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 CDY1Q9Y6F8 540 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 FSD2A1L4K1 749 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 KPNA7A9QM74 516 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 CETN3O15182 167 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 TGM5O43548 720 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 TBC1D4O60343 1298 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 CST3P01034 146 aaPredicted RBP16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 PSMC2P35998 433 aaKnown RBP16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 PPP1R2P41236 205 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 RBP5P82980 135 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 CREMQ03060 361 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 BFSP1Q12934 665 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 SV2CQ496J9 727 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 TDRD10Q5VZ19 366 aaKnown RBP16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 ANKRD54Q6NXT1 300 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 PDXDC1Q6P996 788 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 SYCE2Q6PIF2 218 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 LRRC52Q8N7C0 313 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 TMC2Q8TDI7 906 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 CASP10Q92851 521 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 BACE2Q9Y5Z0 518 aa16.25■□□□□ 0.19
SMPDL3A-201ENST00000368440 C5orf42Q9H799 3197 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 CYB561D2O14569 222 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 GLUD1P00367 558 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 ODC1P11926 461 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 OR1D2P34982 312 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 VAMP7P51809 220 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 LEXMQ3ZCV2 418 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 LILRA6Q6PI73 481 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 PPFIBP1Q86W92 1011 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 C12orf76Q8N812 135 aaPredicted RBP16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 APPL2Q8NEU8 664 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 ATXN2LQ8WWM7 1075 aaKnown RBP16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 MAN1C1Q9NR34 630 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 CDH22Q9UJ99 828 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 FBXL5Q9UKA1 691 aa16.24■□□□□ 0.19
SMPDL3A-201ENST00000368440 C2orf16Q68DN1 1984 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 TCF20Q9UGU0 1960 aaKnown RBP16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 C4BPAP04003 597 aaKnown RBP16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 PNPLA4P41247 253 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 MRPS5P82675 430 aaKnown RBP16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 FKBP3Q00688 224 aaKnown RBP16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 YWHAHQ04917 246 aaPredicted RBP16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 PAK1Q13153 545 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 ZSCAN23Q3MJ62 389 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 CTXN3Q4LDR2 81 aa16.23■□□□□ 0.19
SMPDL3A-201ENST00000368440 ZNF280DQ6N043 979 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms