RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CRY2Q49AN0 593 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ZNF189O75820 626 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ATP1A1P05023 1023 aaKnown RBP12.2□□□□□ -0.46
SYNE1-204ENST00000367248 TMEM253P0C7T8 217 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 GARTP22102 1010 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 TLK2Q86UE8 772 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 CFAP61Q8NHU2 1237 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ATXN7L3BQ96GX2 97 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 DDX50Q9BQ39 737 aaKnown RBP12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ATP9BO43861 1147 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 FKTNO75072 461 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ITGB3P05106 788 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 NR1D1P20393 614 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 POU5F1BQ06416 359 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 DGKZQ13574 1117 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 KLHL38Q2WGJ6 581 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 MPZL3Q6UWV2 235 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 CAMTA1Q9Y6Y1 1673 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 IRF6O14896 467 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ACADSBP45954 432 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 GPS1Q13098 491 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 SNX17Q15036 470 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 GJC2Q5T442 439 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-204ENST00000367248 GPAT2Q6NUI2 795 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 TC2NQ8N9U0 490 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 A1CFQ9NQ94 594 aaKnown RBP12.2□□□□□ -0.46
SYNE1-204ENST00000367248 STK38LQ9Y2H1 464 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 SKIP12755 728 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 AKT1P31749 480 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 GNL1P36915 607 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ADCYAP1R1P41586 468 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 PRAMEP78395 509 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 TRAPPC11Q7Z392 1133 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 DEFB118Q96PH6 123 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 TIMM13Q9Y5L4 95 aaPredicted RBP12.2□□□□□ -0.46
SYNE1-204ENST00000367248 A0A1W2PQJ5 194 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 APOL1O14791 398 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 GUCY2CP25092 1073 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 SOX10P56693 466 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 RCN2Q14257 317 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 FBXO38Q6PIJ6 1188 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 ZNF677Q86XU0 584 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 SLITRK1Q96PX8 696 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 PLAAQ9Y263 795 aa12.2□□□□□ -0.46
SYNE1-204ENST00000367248 COPEO14579 308 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 PCSK7Q16549 785 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 PTGISQ16647 500 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 SLC7A14Q8TBB6 771 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 CBWD1Q9BRT8 395 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 SNX2O60749 519 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 CNTN2Q02246 1040 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 PHLDB3Q6NSJ2 640 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 CEP120Q8N960 986 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 SLC35G2Q8TBE7 412 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 IRX2Q9BZI1 471 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 TMEM88BA6NKF7 163 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 HMGB1P1B2RPK0 211 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 TTI1O43156 1089 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 MBL2P11226 248 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 CYP2W1Q8TAV3 490 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 ABHD16BQ9H3Z7 469 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 MX2P20592 715 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 EPC2Q52LR7 807 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 IZUMO3Q5VZ72 239 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 RAD9BQ6WBX8 426 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 LMNTD2Q8IXW0 634 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 TRAPPC12Q8WVT3 735 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 GTF2H1P32780 548 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 PDIA2Q13087 525 aaKnown RBP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 CTXN3Q4LDR2 81 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 CXCL17Q6UXB2 119 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 RCOR2Q8IZ40 523 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 PPM1NQ8N819 430 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 RAB3IPQ96QF0 476 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 WDR24Q96S15 920 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 VTA1Q9NP79 307 aa12.19□□□□□ -0.46
SYNE1-204ENST00000367248 DBR1Q9UK59 544 aaKnown RBP12.19□□□□□ -0.46
SYNE1-204ENST00000367248 KPNA6O60684 536 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 INSRRP14616 1297 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 NR1H3Q13133 447 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ATP11CQ8NB49 1132 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 MKL1Q969V6 931 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 SNX12Q9UMY4 172 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 CHEK2O96017 543 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 AKR1A1P14550 325 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 TAC1P20366 129 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 HARS2P49590 506 aaKnown RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ERVK-9P63128 1117 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ERVK-24P63145 666 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 DCAF6Q58WW2 860 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 CHSY1Q86X52 802 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 ATL2Q8NHH9 583 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 MCEEQ96PE7 176 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 GYPCP04921 128 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 CCZ1BP86790 482 aa12.18□□□□□ -0.46
SYNE1-204ENST00000367248 CCZ1P86791 482 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-204ENST00000367248 NOGQ13253 232 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms