RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SCARA5Q6ZMJ2 495 aa21.33■■□□□ 1.01
CLN3-205ENST00000359984 FAXDC2Q96IV6 333 aa21.33■■□□□ 1.01
CLN3-205ENST00000359984 NHEJ1Q9H9Q4 299 aaPredicted RBP21.33■■□□□ 1.01
CLN3-205ENST00000359984 CACNG4Q9UBN1 327 aa21.33■■□□□ 1.01
CLN3-205ENST00000359984 EIF4A3P38919 411 aaKnown RBP21.32■■□□□ 1
CLN3-205ENST00000359984 PRKCIP41743 596 aa21.32■■□□□ 1
CLN3-205ENST00000359984 NOMO2Q5JPE7 1267 aa21.32■■□□□ 1
CLN3-205ENST00000359984 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.32■■□□□ 1
CLN3-205ENST00000359984 FMNL3Q8IVF7 1028 aa21.32■■□□□ 1
CLN3-205ENST00000359984 UBR7Q8N806 425 aa21.32■■□□□ 1
CLN3-205ENST00000359984 BCO2Q9BYV7 579 aa21.32■■□□□ 1
CLN3-205ENST00000359984 HAUS4Q9H6D7 363 aa21.32■■□□□ 1
CLN3-205ENST00000359984 LRFN2Q9ULH4 789 aa21.32■■□□□ 1
CLN3-205ENST00000359984 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.32■■□□□ 1
CLN3-205ENST00000359984 WEE2P0C1S8 567 aa21.32■■□□□ 1
CLN3-205ENST00000359984 TDRD12Q587J7 1177 aaKnown RBP21.32■■□□□ 1
CLN3-205ENST00000359984 COL13A1Q5TAT6 717 aaPredicted RBP21.32■■□□□ 1
CLN3-205ENST00000359984 ALPK3Q96L96 1907 aa21.32■■□□□ 1
CLN3-205ENST00000359984 CYP26A1O43174 497 aa21.31■■□□□ 1
CLN3-205ENST00000359984 KRT5P13647 590 aa21.31■■□□□ 1
CLN3-205ENST00000359984 P4HA1P13674 534 aa21.31■■□□□ 1
CLN3-205ENST00000359984 C7orf61Q8IZ16 206 aa21.31■■□□□ 1
CLN3-205ENST00000359984 RPUSD2Q8IZ73 545 aaKnown RBP21.31■■□□□ 1
CLN3-205ENST00000359984 ZNF560Q96MR9 790 aa21.31■■□□□ 1
CLN3-205ENST00000359984 SDCBP2Q9H190 292 aa21.31■■□□□ 1
CLN3-205ENST00000359984 SMYD3Q9H7B4 428 aa21.31■■□□□ 1
CLN3-205ENST00000359984 CISHQ9NSE2 258 aa21.31■■□□□ 1
CLN3-205ENST00000359984 CNTN6Q9UQ52 1028 aa21.31■■□□□ 1
CLN3-205ENST00000359984 PCDHB4Q9Y5E5 795 aa21.31■■□□□ 1
CLN3-205ENST00000359984 BZW2Q9Y6E2 419 aaKnown RBP21.31■■□□□ 1
CLN3-205ENST00000359984 TTC3P53804 2025 aa21.31■■□□□ 1
CLN3-205ENST00000359984 SCN1AP35498 2009 aa21.3■■□□□ 1
CLN3-205ENST00000359984 SSU72P8A0A1W2PR75 194 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CASTOR2A6NHX0 329 aa21.3■■□□□ 1
CLN3-205ENST00000359984 SPTLC1O15269 473 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CCDC172P0C7W6 258 aa21.3■■□□□ 1
CLN3-205ENST00000359984 ACRP10323 421 aa21.3■■□□□ 1
CLN3-205ENST00000359984 IGFBP6P24592 240 aaPredicted RBP21.3■■□□□ 1
CLN3-205ENST00000359984 PNPLA4P41247 253 aa21.3■■□□□ 1
CLN3-205ENST00000359984 RAP1GAPP47736 663 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CLCNKBP51801 687 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CDH8P55286 799 aa21.3■■□□□ 1
CLN3-205ENST00000359984 TNNC1P63316 161 aa21.3■■□□□ 1
CLN3-205ENST00000359984 MAPK8IP2Q13387 824 aaPredicted RBP21.3■■□□□ 1
CLN3-205ENST00000359984 ZNF571Q7Z3V5 609 aaPredicted RBP21.3■■□□□ 1
CLN3-205ENST00000359984 NPAS4Q8IUM7 802 aa21.3■■□□□ 1
CLN3-205ENST00000359984 KIAA1524Q8TCG1 905 aa21.3■■□□□ 1
CLN3-205ENST00000359984 URGCPQ8TCY9 931 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CCDC42Q96M95 316 aa21.3■■□□□ 1
CLN3-205ENST00000359984 PAAF1Q9BRP4 392 aa21.3■■□□□ 1
CLN3-205ENST00000359984 PRKAG2Q9UGJ0 569 aa21.3■■□□□ 1
CLN3-205ENST00000359984 ABHD14A-ACY1A0A1B0GW23 586 aa21.3■■□□□ 1
CLN3-205ENST00000359984 PODXLO00592 558 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CD58P19256 250 aa21.3■■□□□ 1
CLN3-205ENST00000359984 RPL9P32969 192 aaKnown RBP21.3■■□□□ 1
CLN3-205ENST00000359984 TAF6P49848 677 aa21.3■■□□□ 1
CLN3-205ENST00000359984 PTK2Q05397 1052 aa21.3■■□□□ 1
CLN3-205ENST00000359984 TUSC3Q13454 348 aa21.3■■□□□ 1
CLN3-205ENST00000359984 ASTE1Q2TB18 679 aaPredicted RBP21.3■■□□□ 1
CLN3-205ENST00000359984 TOGARAM2Q6ZUX3 1019 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CCDC170Q8IYT3 715 aa21.3■■□□□ 1
CLN3-205ENST00000359984 RABGGTAQ92696 567 aa21.3■■□□□ 1
CLN3-205ENST00000359984 ABHD8Q96I13 439 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CASD1Q96PB1 797 aa21.3■■□□□ 1
CLN3-205ENST00000359984 CYP3A43Q9HB55 503 aa21.3■■□□□ 1
CLN3-205ENST00000359984 ACP6Q9NPH0 428 aa21.3■■□□□ 1
CLN3-205ENST00000359984 SNX9Q9Y5X1 595 aa21.3■■□□□ 1
CLN3-205ENST00000359984 EPN1Q9Y6I3 576 aaPredicted RBP21.3■■□□□ 1
CLN3-205ENST00000359984 KPNA7A9QM74 516 aa21.29■■□□□ 1
CLN3-205ENST00000359984 PFKMP08237 780 aa21.29■■□□□ 1
CLN3-205ENST00000359984 KCNJ6P48051 423 aa21.29■■□□□ 1
CLN3-205ENST00000359984 GATMP50440 423 aa21.29■■□□□ 1
CLN3-205ENST00000359984 LILRA4P59901 499 aa21.29■■□□□ 1
CLN3-205ENST00000359984 UPP1Q16831 310 aa21.29■■□□□ 1
CLN3-205ENST00000359984 TMEM270Q6UE05 265 aa21.29■■□□□ 1
CLN3-205ENST00000359984 ABI1Q8IZP0 508 aa21.29■■□□□ 1
CLN3-205ENST00000359984 MMS19Q96T76 1030 aa21.29■■□□□ 1
CLN3-205ENST00000359984 IL23AQ9NPF7 189 aa21.29■■□□□ 1
CLN3-205ENST00000359984 TBC1D13Q9NVG8 400 aa21.29■■□□□ 1
CLN3-205ENST00000359984 RNF216Q9NWF9 866 aaPredicted RBP21.29■■□□□ 1
CLN3-205ENST00000359984 KANSL3Q9P2N6 904 aa21.29■■□□□ 1
CLN3-205ENST00000359984 MICAL3Q7RTP6 2002 aa21.29■■□□□ 1
CLN3-205ENST00000359984 B4GALT3O60512 393 aa21.28■■□□□ 1
CLN3-205ENST00000359984 DDHD2O94830 711 aa21.28■■□□□ 1
CLN3-205ENST00000359984 SV2CQ496J9 727 aa21.28■■□□□ 1
CLN3-205ENST00000359984 SLC47A2Q86VL8 602 aa21.28■■□□□ 1
CLN3-205ENST00000359984 ZNF280BQ86YH2 543 aa21.28■■□□□ 1
CLN3-205ENST00000359984 BADQ92934 168 aa21.28■■□□□ 1
CLN3-205ENST00000359984 DDX27Q96GQ7 796 aaKnown RBP21.28■■□□□ 1
CLN3-205ENST00000359984 DESI2Q9BSY9 194 aa21.28■■□□□ 1
CLN3-205ENST00000359984 DEF6Q9H4E7 631 aa21.28■■□□□ 1
CLN3-205ENST00000359984 GDAP2Q9NXN4 497 aa21.28■■□□□ 1
CLN3-205ENST00000359984 HOXA2O43364 376 aa21.28■■□□□ 1
CLN3-205ENST00000359984 NDUFA10O95299 355 aa21.28■■□□□ 1
CLN3-205ENST00000359984 CYLC1P35663 651 aaPredicted RBP21.28■■□□□ 1
CLN3-205ENST00000359984 YWHAEP62258 255 aaKnown RBP21.28■■□□□ 1
CLN3-205ENST00000359984 DSC1Q08554 894 aa21.28■■□□□ 1
CLN3-205ENST00000359984 RBBP8NLQ8NC74 664 aaPredicted RBP21.28■■□□□ 1
CLN3-205ENST00000359984 OLIG1Q8TAK6 271 aa21.28■■□□□ 1
CLN3-205ENST00000359984 SYT11Q9BT88 431 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms