RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DARSP14868 501 aaKnown RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 PMS2P54278 862 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 CDK17Q00537 523 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 RAD51Q06609 339 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 GPAT2Q6NUI2 795 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 NUDT18Q6ZVK8 323 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 C18orf8Q96DM3 657 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 HAUS8Q9BT25 410 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ADNPQ9H2P0 1102 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TTC26A0AVF1 554 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ASB14A6NK59 587 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 SGPL1O95470 568 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 GCFC2P16383 781 aaKnown RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 GCLCP48506 637 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 NCOA4Q13772 614 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 SPARCL1Q14515 664 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 CCDC81Q6ZN84 652 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TRMT11Q7Z4G4 463 aaKnown RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 AGPAT1Q99943 283 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 DDTLA6NHG4 134 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 PFDN1O60925 122 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ADRA2BP18089 450 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 JAK3P52333 1124 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 PGS1Q32NB8 556 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 UNC13DQ70J99 1090 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 DCAF4Q8WV16 495 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ZBTB18Q99592 522 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ACTR2P61160 394 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 STOX1Q6ZVD7 989 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ING2Q9H160 280 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 PCMTD2Q9NV79 361 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 BARHL2Q9NY43 387 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 CBX4O00257 560 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 EPHA7Q15375 998 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 CCDC144BQ3MJ40 725 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 NAALADL2Q58DX5 795 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TDRD10Q5VZ19 366 aaKnown RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 SLC35G2Q8TBE7 412 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 FBXO40Q9UH90 709 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 AIM2O14862 343 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 EIF2S1P05198 315 aaKnown RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 DGKDQ16760 1214 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 OTOAQ7RTW8 1153 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 FEM1CQ96JP0 617 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TRIM54Q9BYV2 358 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 YIPF3Q9GZM5 350 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 EXO5Q9H790 373 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 SLC27A5Q9Y2P5 690 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 HES2Q9Y543 173 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 WDR19Q8NEZ3 1342 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 CTIFO43310 598 aaKnown RBP7.71□□□□□ -1.17
VPS13A-202ENST00000357409 KRT76Q01546 638 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 OVGP1Q12889 678 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 RALGDSQ12967 914 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 SURF1Q15526 300 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 MOV10L1Q9BXT6 1211 aaKnown RBP7.71□□□□□ -1.17
VPS13A-202ENST00000357409 KLHL3Q9UH77 587 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 APOBEC2Q9Y235 224 aaKnown RBP7.71□□□□□ -1.17
VPS13A-202ENST00000357409 TMEM191CA6NGB0 347 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 PRKAG1P54619 331 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 LMNB2Q03252 620 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 PLD1Q13393 1074 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 PDCD2Q16342 344 aaPredicted RBP7.71□□□□□ -1.17
VPS13A-202ENST00000357409 C12orf60Q5U649 245 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 PHLDB3Q6NSJ2 640 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 OTOP2Q7RTS6 562 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 TADA2BQ86TJ2 420 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 RUVBL2Q9Y230 463 aaKnown RBP7.71□□□□□ -1.17
VPS13A-202ENST00000357409 NUDT14O95848 222 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 ANKRD20A4Q4UJ75 823 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 ANKRD20A8PQ5CZ79 823 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 ANKRD20A2Q5SQ80 823 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 ANKRD20A1Q5TYW2 823 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 MCPH1Q8NEM0 835 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 NACC2Q96BF6 587 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 SPZ1Q9BXG8 430 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 NPHS2Q9NP85 383 aa7.71□□□□□ -1.17
VPS13A-202ENST00000357409 NFIBO00712 420 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 CYP2F1P24903 491 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 PSMC6P62333 389 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 CXCL17Q6UXB2 119 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 ZFPM1Q8IX07 1006 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 C2orf40Q9H1Z8 148 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 RNPEPQ9H4A4 650 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 ABHD10Q9NUJ1 306 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 DDIT4Q9NX09 232 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 DDX3YO15523 660 aaKnown RBP7.71□□□□□ -1.18
VPS13A-202ENST00000357409 CYTH3O43739 400 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 POLBP06746 335 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 POU1F1P28069 291 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 APBA1Q02410 837 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 KYNUQ16719 465 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 POMZP3Q6PJE2 187 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 CLEC4FQ8N1N0 589 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 UXS1Q8NBZ7 420 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 B3GALNT2Q8NCR0 500 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 TP53INP1Q96A56 240 aa7.71□□□□□ -1.18
VPS13A-202ENST00000357409 MTMR4Q9NYA4 1195 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms