RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TSPY8P0CW00 308 aa2.56□□□□□ -2
VPS54-202ENST00000354504 IFNGR1P15260 489 aa2.56□□□□□ -2
VPS54-202ENST00000354504 RPA1P27694 616 aa2.56□□□□□ -2
VPS54-202ENST00000354504 ASPAP45381 313 aa2.56□□□□□ -2
VPS54-202ENST00000354504 COPB1P53618 953 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 ADKP55263 362 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 PPP2R5DQ14738 602 aa2.56□□□□□ -2
VPS54-202ENST00000354504 TESK1Q15569 626 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CDC37Q16543 378 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 LCE3BQ5TA77 95 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PAPD7Q5XG87 772 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 SASS6Q6UVJ0 657 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CRELD2Q6UXH1 353 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 UNC13DQ70J99 1090 aa2.56□□□□□ -2
VPS54-202ENST00000354504 IQCA1Q86XH1 822 aa2.56□□□□□ -2
VPS54-202ENST00000354504 SPC24Q8NBT2 197 aa2.56□□□□□ -2
VPS54-202ENST00000354504 TMEM145Q8NBT3 493 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MSANTD4Q8NCY6 345 aa2.56□□□□□ -2
VPS54-202ENST00000354504 COG1Q8WTW3 980 aa2.56□□□□□ -2
VPS54-202ENST00000354504 DDX1Q92499 740 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 SEC14L1Q92503 715 aa2.56□□□□□ -2
VPS54-202ENST00000354504 EZH1Q92800 747 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 SYAP1Q96A49 352 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 FBXL18Q96ME1 805 aa2.56□□□□□ -2
VPS54-202ENST00000354504 TXLNGYQ9BZA5 131 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MTFR1LQ9H019 292 aa2.56□□□□□ -2
VPS54-202ENST00000354504 EPB41L4BQ9H329 900 aa2.56□□□□□ -2
VPS54-202ENST00000354504 UNC45AQ9H3U1 944 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CUEDC2Q9H467 287 aa2.56□□□□□ -2
VPS54-202ENST00000354504 ACSS3Q9H6R3 686 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MAGEF1Q9HAY2 307 aa2.56□□□□□ -2
VPS54-202ENST00000354504 TRIM39Q9HCM9 518 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MYOZ2Q9NPC6 264 aa2.56□□□□□ -2
VPS54-202ENST00000354504 HERC5Q9UII4 1024 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 FBXL5Q9UKA1 691 aa2.56□□□□□ -2
VPS54-202ENST00000354504 GPR55Q9Y2T6 319 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 VPS13AQ96RL7 3174 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PTPRJQ12913 1337 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PITPNM2Q9BZ72 1349 aa2.56□□□□□ -2
VPS54-202ENST00000354504 COL6A3P12111 3177 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PVALEFA0A1B0GWK0 134 aa2.56□□□□□ -2
VPS54-202ENST00000354504 BTNL10A8MVZ5 291 aa2.56□□□□□ -2
VPS54-202ENST00000354504 E9PMD0 336 aa2.56□□□□□ -2
VPS54-202ENST00000354504 H0Y8X5 98 aa2.56□□□□□ -2
VPS54-202ENST00000354504 AGPSO00116 658 aa2.56□□□□□ -2
VPS54-202ENST00000354504 NFIBO00712 420 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MARCH6O60337 910 aa2.56□□□□□ -2
VPS54-202ENST00000354504 DLX3O60479 287 aa2.56□□□□□ -2
VPS54-202ENST00000354504 KATNA1O75449 491 aa2.56□□□□□ -2
VPS54-202ENST00000354504 GH2P01242 217 aa2.56□□□□□ -2
VPS54-202ENST00000354504 ADRB2P07550 413 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PARP1P09874 1014 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 MYBL2P10244 700 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CD247P20963 164 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CASP14P31944 242 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CD96P40200 585 aa2.56□□□□□ -2
VPS54-202ENST00000354504 TECP42680 631 aa2.56□□□□□ -2
VPS54-202ENST00000354504 NCKAP1LP55160 1127 aa2.56□□□□□ -2
VPS54-202ENST00000354504 SLC7A5Q01650 507 aa2.56□□□□□ -2
VPS54-202ENST00000354504 COASYQ13057 564 aa2.56□□□□□ -2
VPS54-202ENST00000354504 COG2Q14746 738 aa2.56□□□□□ -2
VPS54-202ENST00000354504 STK38Q15208 465 aa2.56□□□□□ -2
VPS54-202ENST00000354504 SIX1Q15475 284 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 TARBP2Q15633 366 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 TM4SF20Q53R12 229 aa2.56□□□□□ -2
VPS54-202ENST00000354504 SPECC1LQ69YQ0 1117 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CREG2Q8IUH2 290 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MSL3Q8N5Y2 521 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 NUP133Q8WUM0 1156 aa2.56□□□□□ -2
VPS54-202ENST00000354504 DHX58Q96C10 678 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PNKPQ96T60 521 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MIPEPQ99797 713 aa2.56□□□□□ -2
VPS54-202ENST00000354504 UBAC1Q9BSL1 405 aa2.56□□□□□ -2
VPS54-202ENST00000354504 ANO3Q9BYT9 981 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PRDM14Q9GZV8 571 aa2.56□□□□□ -2
VPS54-202ENST00000354504 KIAA1683Q9H0B3 1180 aa2.56□□□□□ -2
VPS54-202ENST00000354504 VCPKMTQ9H867 229 aa2.56□□□□□ -2
VPS54-202ENST00000354504 KAT14Q9H8E8 782 aa2.56□□□□□ -2
VPS54-202ENST00000354504 OLFML3Q9NRN5 406 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PLAGL2Q9UPG8 496 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PPP2R2CQ9Y2T4 447 aa2.56□□□□□ -2
VPS54-202ENST00000354504 STYXL1Q9Y6J8 313 aa2.56□□□□□ -2
VPS54-202ENST00000354504 TTC3P53804 2025 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PRR19A6NJB7 356 aa2.56□□□□□ -2
VPS54-202ENST00000354504 NEMFO60524 1076 aa2.56□□□□□ -2
VPS54-202ENST00000354504 RNGTTO60942 597 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 TBC1D8O95759 1140 aa2.56□□□□□ -2
VPS54-202ENST00000354504 BAG3O95817 575 aa2.56□□□□□ -2
VPS54-202ENST00000354504 ICAM1P05362 532 aa2.56□□□□□ -2
VPS54-202ENST00000354504 MYCLP1P12525 358 aaPredicted RBP2.56□□□□□ -2
VPS54-202ENST00000354504 DOC2BQ14184 412 aa2.56□□□□□ -2
VPS54-202ENST00000354504 DPY19L1Q2PZI1 675 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CCDC178Q5BJE1 867 aa2.56□□□□□ -2
VPS54-202ENST00000354504 PRSS36Q5K4E3 855 aa2.56□□□□□ -2
VPS54-202ENST00000354504 GPATCH4Q5T3I0 446 aaKnown RBP2.56□□□□□ -2
VPS54-202ENST00000354504 RINT1Q6NUQ1 792 aa2.56□□□□□ -2
VPS54-202ENST00000354504 CRTC3Q6UUV7 619 aa2.56□□□□□ -2
VPS54-202ENST00000354504 FAM214BQ7L5A3 538 aa2.56□□□□□ -2
VPS54-202ENST00000354504 NIPA1Q7RTP0 329 aa2.56□□□□□ -2
VPS54-202ENST00000354504 ANKS1BQ7Z6G8 1248 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms