RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 GJB1P08034 283 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 ADCY2Q08462 1091 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 LAMTOR4Q0VGL1 99 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 CALCOCO2Q13137 446 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 SLMAPQ14BN4 828 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 LIN9Q5TKA1 542 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 FAM160B1Q5W0V3 765 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 ZBTB10Q96DT7 871 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 FAM212AQ96EL1 285 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 VCPIP1Q96JH7 1222 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TCHPQ9BT92 498 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TXNRD2Q9NNW7 524 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 WHRNQ9P202 907 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 ASIC3Q9UHC3 531 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 USTQ9Y2C2 406 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.42■□□□□ 0.22
UPF3B-202ENST00000345865 NEU2Q9Y3R4 380 aa16.42■□□□□ 0.22
UPF3B-202ENST00000345865 TGFB3P10600 412 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 CD58P19256 250 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 GJC1P36383 396 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 LIG3P49916 1009 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 PTK6Q13882 451 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 ZNF394Q53GI3 561 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 CDCA2Q69YH5 1023 aaPredicted RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 CCDC50Q8IVM0 306 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 RNF149Q8NC42 400 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 CLMNQ96JQ2 1002 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 PWWP2AQ96N64 755 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 GPR20Q99678 358 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 CDC42EP4Q9H3Q1 356 aaKnown RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 KLHL11Q9NVR0 708 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 A0A087WUV0 522 aaPredicted RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 PSTPIP1O43586 416 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 DDNO94850 711 aaPredicted RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 MMP8P22894 467 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 MMP13P45452 471 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 C1QBPQ07021 282 aaKnown RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 ZNF252P-AS1Q0IIN9 211 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 TNFAIP8L3Q5GJ75 292 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 TADA2BQ86TJ2 420 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 PRUNE1Q86TP1 453 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 WDR49Q8IV35 697 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 RHOT1Q8IXI2 618 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 TRAPPC12Q8WVT3 735 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 TMEM109Q9BVC6 243 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 MRPL4Q9BYD3 311 aaKnown RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 ELP3Q9H9T3 547 aa16.41■□□□□ 0.22
UPF3B-202ENST00000345865 MRPL47Q9HD33 250 aaKnown RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 DNAJC17Q9NVM6 304 aaKnown RBP16.41■□□□□ 0.22
UPF3B-202ENST00000345865 RGS16O15492 202 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 BRD2P25440 801 aaKnown RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 VPS41P49754 854 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 ITGA8P53708 1063 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 AUHQ13825 339 aaKnown RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 Q3C1V9 767 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 IER5Q5VY09 327 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 MOB2Q70IA6 237 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 CDR2LQ86X02 465 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 KATNAL2Q8IYT4 538 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 TMEM130Q8N3G9 435 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 FEZF2Q8TBJ5 459 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 OTUD5Q96G74 571 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 OSBPL8Q9BZF1 889 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 ASCC2Q9H1I8 757 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 CPSF3Q9UKF6 684 aaKnown RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 IGKV6-21A0A0C4DH24 114 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 A0A0G2JLL6 359 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 TCRBV5S1A1TA0A578 114 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 MEFVO15553 781 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 ACSL3O95573 720 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 CHN1P15882 459 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 ITIH2P19823 946 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 EFNA5P52803 228 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 ERMARDQ5T6L9 678 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 C6orf89Q6UWU4 347 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 PRRT2Q7Z6L0 340 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 PACS2Q86VP3 889 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 WDTC1Q8N5D0 677 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 CEP120Q8N960 986 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 ATL2Q8NHH9 583 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 BBXQ8WY36 941 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 COPS5Q92905 334 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 SNF8Q96H20 258 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 CCDC114Q96M63 670 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 DDX20Q9UHI6 824 aaKnown RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 CSADQ9Y600 493 aa16.4■□□□□ 0.22
UPF3B-202ENST00000345865 DICER1Q9UPY3 1922 aaKnown RBP16.4■□□□□ 0.22
UPF3B-202ENST00000345865 TMEM191CA6NGB0 347 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 OGTO15294 1046 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 PRKCBP05771 671 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 HOXC6P09630 235 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 WEE2P0C1S8 567 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 TMEM191BP0C7N4 346 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 IRX3P78415 501 aaPredicted RBP16.39■□□□□ 0.21
UPF3B-202ENST00000345865 OGDHQ02218 1023 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 C6orf118Q5T5N4 469 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 MAIP1Q8WWC4 291 aa16.39■□□□□ 0.21
UPF3B-202ENST00000345865 TFAP2BQ92481 460 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms