RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-203ENST00000343508 RNF103-CHMP3A0A140T963 221 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 RSPH10B2B2RC85 870 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 AGPSO00116 658 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 SLC37A4O43826 429 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 MGRN1O60291 552 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 CHEK2O96017 543 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 RSPH10BP0C881 870 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 RALAP11233 206 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 ALAS1P13196 640 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 PSMC3P17980 439 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 FECHP22830 423 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 STAT3P40763 770 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 FLOT2Q14254 428 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 LBRQ14739 615 aaKnown RBP5.03□□□□□ -1.6
CSMD3-203ENST00000343508 DLGAP5Q15398 846 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 CNGA2Q16280 664 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 CDO1Q16878 200 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 CEP55Q53EZ4 464 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 SNX30Q5VWJ9 437 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 IZUMO2Q6UXV1 221 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 ADAMTS13Q76LX8 1427 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 ZNF34Q8IZ26 560 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 TTC39CQ8N584 583 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 CPA5Q8WXQ8 436 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 PURBQ96QR8 312 aaKnown RBP5.03□□□□□ -1.6
CSMD3-203ENST00000343508 SPC25Q9HBM1 224 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 SORCS3Q9UPU3 1222 aa5.03□□□□□ -1.6
CSMD3-203ENST00000343508 TFRCP02786 760 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 STIP1P31948 543 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 LRRC43Q8N309 656 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SLC44A5Q8NCS7 719 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 COA1Q9GZY4 146 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 RBAKQ9NYW8 714 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 WDR35Q9P2L0 1181 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 DCDC2Q9UHG0 476 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 PALM3A6NDB9 673 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 TRIM49P0CI25 452 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 TRIM49CP0CI26 452 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 KCNJ1P48048 391 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SCNN1DP51172 638 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 KRT76Q01546 638 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 TRIP10Q15642 601 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 TMCO4Q5TGY1 634 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 MSTO1Q9BUK6 570 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 NID2Q14112 1375 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 CCDC195A0A1B0GUA6 201 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 DENND3A2RUS2 1198 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 FOXN3O00409 490 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 PARP6Q2NL67 630 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SCFD1Q8WVM8 642 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 CEP19Q96LK0 163 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 TMEM117Q9H0C3 514 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 PKD2L2Q9NZM6 624 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 AFG3L2Q9Y4W6 797 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ABCC6O95255 1503 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ADCY3O60266 1144 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 RGS2P41220 211 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 EARS2Q5JPH6 523 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SPOPLQ6IQ16 392 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 LRRC6Q86X45 466 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 RPF1Q9H9Y2 349 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 AP4S1Q9Y587 144 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 COPB2P35606 906 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 RPL21P46778 160 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 TMED10P49755 219 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ZNF699Q32M78 642 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 MDH1BQ5I0G3 518 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 THNSL1Q8IYQ7 743 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SUN2Q9UH99 717 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 PPEF1O14829 653 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 XPOTO43592 962 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 IL10P22301 178 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 KCNA4P22459 653 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 MAP4P27816 1152 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ARL13BQ3SXY8 428 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ZFP1Q6P2D0 407 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 UBXN6Q9BZV1 441 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SLC38A10Q9HBR0 1119 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 WARS2Q9UGM6 360 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 TAGLN3Q9UI15 199 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 COMMD3-BMI1R4GMX3 469 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 USP17L10C9JJH3 530 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SPATA18Q8TC71 538 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SCFD2Q8WU76 684 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 CLMNQ96JQ2 1002 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 RSAD1Q9HA92 442 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ZCCHC18P0CG32 403 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 DRD4P21917 467 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 NFX1Q12986 1120 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ZC2HC1CQ53FD0 456 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 MTHFD1LQ6UB35 978 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 CDKL3Q8IVW4 592 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 HACE1Q8IYU2 909 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 VPS11Q9H270 941 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 ABCF3Q9NUQ8 709 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 FIS1Q9Y3D6 152 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 SETD1AO15047 1707 aaKnown RBP5.02□□□□□ -1.61
CSMD3-203ENST00000343508 C4AP0C0L4 1744 aa5.02□□□□□ -1.61
CSMD3-203ENST00000343508 C4BP0C0L5 1744 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms