RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 GIMAP8Q8ND71 665 aaPredicted RBP12.55□□□□□ -0.4
RTN3-203ENST00000341307 UHMK1Q8TAS1 419 aaKnown RBP12.55□□□□□ -0.4
RTN3-203ENST00000341307 RIN3Q8TB24 985 aa12.55□□□□□ -0.4
RTN3-203ENST00000341307 CDK5RAP3Q96JB5 506 aa12.55□□□□□ -0.4
RTN3-203ENST00000341307 TGS1Q96RS0 853 aaKnown RBP12.55□□□□□ -0.4
RTN3-203ENST00000341307 DUSP9Q99956 384 aaKnown RBP12.55□□□□□ -0.4
RTN3-203ENST00000341307 OSBPL10Q9BXB5 764 aa12.55□□□□□ -0.4
RTN3-203ENST00000341307 TIMMDC1Q9NPL8 285 aa12.55□□□□□ -0.4
RTN3-203ENST00000341307 ZNF212Q9UDV6 495 aa12.55□□□□□ -0.4
RTN3-203ENST00000341307 HACL1Q9UJ83 578 aa12.55□□□□□ -0.4
RTN3-203ENST00000341307 PCDHA12Q9UN75 941 aa12.55□□□□□ -0.4
RTN3-203ENST00000341307 DDX3XO00571 662 aaKnown RBP eCLIP12.54□□□□□ -0.46e-22■■■□□ 17.7
RTN3-203ENST00000341307 RXRGP48443 463 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 STAT2P52630 851 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 POU5F1Q01860 360 aaKnown RBP12.54□□□□□ -0.4
RTN3-203ENST00000341307 ORC2Q13416 577 aaPredicted RBP12.54□□□□□ -0.4
RTN3-203ENST00000341307 ITGA9Q13797 1035 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 MPP2Q14168 576 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 PDCD4Q53EL6 469 aaKnown RBP12.54□□□□□ -0.4
RTN3-203ENST00000341307 PRAMEF18Q5VWM3 479 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 HGSNATQ68CP4 663 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 PACS1Q6VY07 963 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 SLC30A10Q6XR72 485 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 TAOK1Q7L7X3 1001 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 CYP2W1Q8TAV3 490 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 TMEM109Q9BVC6 243 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 EIF2AQ9BY44 585 aaKnown RBP12.54□□□□□ -0.4
RTN3-203ENST00000341307 CADM1Q9BY67 442 aaKnown RBP12.54□□□□□ -0.4
RTN3-203ENST00000341307 NLRC4Q9NPP4 1024 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 FBXO28Q9NVF7 368 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 CLEC11AQ9Y240 323 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 ITM2BQ9Y287 266 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 TMX2Q9Y320 296 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 FADS3Q9Y5Q0 445 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 RPTORQ8N122 1335 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 ZNF862O60290 1169 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 PTPN4P29074 926 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 SERPINB8P50452 374 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 ARHGAP4P98171 946 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 RELAQ04206 551 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 KIF22Q14807 665 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 PRR16Q569H4 304 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 KRT79Q5XKE5 535 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 IZUMO2Q6UXV1 221 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 EXOC8Q8IYI6 725 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 USP33Q8TEY7 942 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 LARP4BQ92615 738 aaKnown RBP12.54□□□□□ -0.4
RTN3-203ENST00000341307 TAF4BQ92750 862 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 DGCR14Q96DF8 476 aaKnown RBP12.54□□□□□ -0.4
RTN3-203ENST00000341307 SLITRK6Q9H5Y7 841 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 SIK3Q9Y2K2 1263 aa12.54□□□□□ -0.4
RTN3-203ENST00000341307 E9PBE3 544 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 FAM86B1E9PN63 330 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 CCDC188H7C350 402 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 PGRMC1O00264 195 aaKnown RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 KRIT1O00522 736 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 OXSR1O95747 527 aaPredicted RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 FAM86B2P0C5J1 330 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 PIM1P11309 404 aaPredicted RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 MKRN3Q13064 507 aaKnown RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 PPP2R5CQ13362 524 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 RPS6KA1Q15418 735 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 BTNL9Q6UXG8 535 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 SV2BQ7L1I2 683 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 BBS5Q8N3I7 341 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 ANKRD42Q8N9B4 389 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 CNOT6LQ96LI5 555 aaKnown RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 LRRC37BQ96QE4 947 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 PHF12Q96QT6 1004 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 C7orf25Q9BPX7 421 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 STK33Q9BYT3 514 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 FAM207AQ9NSI2 230 aaPredicted RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 PGAP2Q9UHJ9 254 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 UTP11Q9Y3A2 253 aaKnown RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 N6AMT1Q9Y5N5 214 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 ADAM23O75077 832 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 CAP2P40123 477 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 RASSF2P50749 326 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 UBXN2AP68543 259 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 UNC13DQ70J99 1090 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 RRAGAQ7L523 313 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 OTUD6AQ7L8S5 288 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 NUP93Q8N1F7 819 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 KIAA0895Q8NCT3 520 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 GLIS3Q8NEA6 775 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 CEP70Q8NHQ1 597 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 BAP1Q92560 729 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 ZBED3Q96IU2 234 aaPredicted RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 ECSITQ9BQ95 431 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 NOC4LQ9BVI4 516 aaKnown RBP12.53□□□□□ -0.4
RTN3-203ENST00000341307 RAB34Q9BZG1 259 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 SEMA4AQ9H3S1 761 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 GOLPH3Q9H4A6 298 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 RABL2BQ9UNT1 228 aa12.53□□□□□ -0.4
RTN3-203ENST00000341307 E9PMD0 336 aa12.52□□□□□ -0.4
RTN3-203ENST00000341307 FBP2O00757 339 aa12.52□□□□□ -0.4
RTN3-203ENST00000341307 CFBP00751 764 aa12.52□□□□□ -0.4
RTN3-203ENST00000341307 ARPC4P59998 168 aa12.52□□□□□ -0.4
RTN3-203ENST00000341307 PFKPQ01813 784 aa12.52□□□□□ -0.4
RTN3-203ENST00000341307 DSG1Q02413 1049 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms