RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 DNAJC3Q13217 504 aa20.24■□□□□ 0.83
RTN4-201ENST00000317610 RASA2Q15283 850 aa20.24■□□□□ 0.83
RTN4-201ENST00000317610 NLGN1Q8N2Q7 840 aa20.24■□□□□ 0.83
RTN4-201ENST00000317610 BSNDQ8WZ55 320 aa20.24■□□□□ 0.83
RTN4-201ENST00000317610 VCPIP1Q96JH7 1222 aa20.24■□□□□ 0.83
RTN4-201ENST00000317610 TRABDQ9H4I3 376 aa20.24■□□□□ 0.83
RTN4-201ENST00000317610 KMT5AQ9NQR1 393 aa20.24■□□□□ 0.83
RTN4-201ENST00000317610 HGSO14964 777 aaPredicted RBP20.23■□□□□ 0.83
RTN4-201ENST00000317610 LIASO43766 372 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 ONECUT3O60422 494 aaPredicted RBP20.23■□□□□ 0.83
RTN4-201ENST00000317610 SPAG7O75391 227 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 DCTN3O75935 186 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 GNAZP19086 355 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 GARTP22102 1010 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 CLDN10P78369 228 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 MAMLD1Q13495 774 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 PLEKHA7Q6IQ23 1121 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 TRIM72Q6ZMU5 477 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 VSIG1Q86XK7 387 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 SAMD3Q8N6K7 520 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 LRRC37BQ96QE4 947 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 PPCSQ9HAB8 311 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 C17orf75Q9HAS0 396 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 MRPL47Q9HD33 250 aaKnown RBP20.23■□□□□ 0.83
RTN4-201ENST00000317610 GRID1Q9ULK0 1009 aa20.23■□□□□ 0.83
RTN4-201ENST00000317610 E7ENQ6 273 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 CAP2P40123 477 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 ZYXQ15942 572 aaKnown RBP20.22■□□□□ 0.83
RTN4-201ENST00000317610 C2CD6Q53TS8 623 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 PHF13Q86YI8 300 aaPredicted RBP20.22■□□□□ 0.83
RTN4-201ENST00000317610 C10orf82Q8WW14 230 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 ZNF516Q92618 1163 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 PAIP2Q9BPZ3 127 aaKnown RBP20.22■□□□□ 0.83
RTN4-201ENST00000317610 RNPEPL1Q9HAU8 725 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 SMNDC1O75940 238 aaKnown RBP eCLIP20.22■□□□□ 0.832e-15■■■□□ 16
RTN4-201ENST00000317610 SFNP31947 248 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 DSG3P32926 999 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 NOMO3P69849 1222 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 GSTA5Q7RTV2 222 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 MCF2L2Q86YR7 1114 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 SPOCK2Q92563 424 aa20.22■□□□□ 0.83
RTN4-201ENST00000317610 CCDC189A1A4V9 331 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 WDR64B1ANS9 1081 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 TRAFD1O14545 582 aaPredicted RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 CCNE2O96020 404 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 CD58P19256 250 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 ACO1P21399 889 aaKnown RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 BLMHQ13867 455 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 PKN2Q16513 984 aaKnown RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 EAPPQ56P03 285 aaPredicted RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 SAMD1Q6SPF0 538 aaPredicted RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 FAM151AQ8WW52 585 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 C11orf70Q9BRQ4 267 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 CYLDQ9NQC7 956 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 SCINQ9Y6U3 715 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 WDR81Q562E7 1941 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 TCP10L2B9ZVM9 353 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 PEX11AO75192 247 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 LUC7L3O95232 432 aaKnown RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 T-ENOLP0DO92 83 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 ALDH3A1P30838 453 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 NFX1Q12986 1120 aaKnown RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 ANO5Q75V66 913 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 ALLCQ8N6M5 410 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 GLIS1Q8NBF1 620 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 SYTL5Q8TDW5 730 aaPredicted RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 SLC7A6OSQ96CW6 309 aaPredicted RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 SMC6Q96SB8 1091 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 FHDC1Q9C0D6 1143 aaPredicted RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 SLCO1B3Q9NPD5 702 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 TMOD2Q9NZR1 351 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 NKX1-2Q9UD57 310 aaPredicted RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.21■□□□□ 0.83
RTN4-201ENST00000317610 ARID2Q68CP9 1835 aa20.21■□□□□ 0.83
RTN4-201ENST00000317610 TYROBPO43914 113 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 CALB2P22676 271 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 TARSP26639 723 aaKnown RBP20.2■□□□□ 0.82
RTN4-201ENST00000317610 MORF4L2Q15014 288 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 ZACNQ401N2 412 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 BRDTQ58F21 947 aaPredicted RBP20.2■□□□□ 0.82
RTN4-201ENST00000317610 RCOR2Q8IZ40 523 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 ABRAQ8N0Z2 381 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 ZNF622Q969S3 477 aaKnown RBP eCLIP20.2■□□□□ 0.822e-35■□□□□ 10.6
RTN4-201ENST00000317610 KIAA1683Q9H0B3 1180 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 CYP39A1Q9NYL5 469 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.2■□□□□ 0.82
RTN4-201ENST00000317610 SLC24A2Q9UI40 661 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 RPL26L1Q9UNX3 145 aaKnown RBP20.2■□□□□ 0.82
RTN4-201ENST00000317610 LRRC42Q9Y546 428 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 ALOX15BO15296 676 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 NEBLO76041 1014 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 PECAM1P16284 738 aaPredicted RBP20.2■□□□□ 0.82
RTN4-201ENST00000317610 RPA3P35244 121 aaPredicted RBP20.2■□□□□ 0.82
RTN4-201ENST00000317610 CETN2P41208 172 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 KRT76Q01546 638 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 ENDOVQ8N8Q3 282 aaKnown RBP20.2■□□□□ 0.82
RTN4-201ENST00000317610 FAM13CQ8NE31 585 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 LRRC8CQ8TDW0 803 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 SH3TC2Q8TF17 1288 aa20.2■□□□□ 0.82
RTN4-201ENST00000317610 RBM41Q96IZ5 413 aaKnown RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms