RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 PPP2R2DQ66LE6 453 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 RRAGAQ7L523 313 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 CEP57Q86XR8 500 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 KLHL23Q8NBE8 558 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 PCMTD1Q96MG8 357 aaPredicted RBP19.54■□□□□ 0.72
HMGA1-201ENST00000311487 ZNF558Q96NG5 402 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 GPR62Q9BZJ7 368 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 TRIM5Q9C035 493 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 XYLT2Q9H1B5 865 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 MSRAQ9UJ68 235 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 SNX9Q9Y5X1 595 aa19.54■□□□□ 0.72
HMGA1-201ENST00000311487 LGALS16A8MUM7 142 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 RAP1GAPP47736 663 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 MCCD1P59942 119 aaPredicted RBP19.53■□□□□ 0.72
HMGA1-201ENST00000311487 ZNF699Q32M78 642 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 EPC2Q52LR7 807 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 MMS19Q96T76 1030 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 ARID3AQ99856 593 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 MYO9BQ13459 2157 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 ZNF500O60304 480 aaPredicted RBP19.53■□□□□ 0.72
HMGA1-201ENST00000311487 RPL9P32969 192 aaKnown RBP19.53■□□□□ 0.72
HMGA1-201ENST00000311487 AP3M2P53677 418 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 SYCP1Q15431 976 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 DCLRE1AQ6PJP8 1040 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 SPC24Q8NBT2 197 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 LMO3Q8TAP4 145 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 ARNTL2Q8WYA1 636 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 KAT5Q92993 513 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 VN1R3Q9BXE9 311 aa19.53■□□□□ 0.72
HMGA1-201ENST00000311487 INTS2Q9H0H0 1204 aaKnown RBP19.53■□□□□ 0.72
HMGA1-201ENST00000311487 FAM207AQ9NSI2 230 aaPredicted RBP19.53■□□□□ 0.72
HMGA1-201ENST00000311487 KIAA1671Q9BY89 1806 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 A0A1B0GTH6 734 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 KPNA7A9QM74 516 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 RFXAPO00287 272 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 SOX1O00570 391 aaPredicted RBP19.52■□□□□ 0.72
HMGA1-201ENST00000311487 HCRTO43612 131 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 PON1P27169 355 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 CDH8P55286 799 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 NR1I3Q14994 352 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 EXOC3L4Q17RC7 722 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 FKBP15Q5T1M5 1219 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.52■□□□□ 0.72
HMGA1-201ENST00000311487 ARHGEF19Q8IW93 802 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 EHBP1Q8NDI1 1231 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 CLP1Q92989 425 aaKnown RBP19.52■□□□□ 0.72
HMGA1-201ENST00000311487 IGSF21Q96ID5 467 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 COLEC11Q9BWP8 271 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 SLC28A3Q9HAS3 691 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 ADAM28Q9UKQ2 775 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 PCDHB12Q9Y5F1 795 aa19.52■□□□□ 0.72
HMGA1-201ENST00000311487 C2CD2LO14523 706 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 WEE2P0C1S8 567 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 LAG3P18627 525 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 BMPR1AP36894 532 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 TAF6P49848 677 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 NOP14P78316 857 aaKnown RBP19.51■□□□□ 0.71
HMGA1-201ENST00000311487 MYO1EQ12965 1108 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 FILIP1LQ4L180 1135 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 PRPF38BQ5VTL8 546 aaKnown RBP19.51■□□□□ 0.71
HMGA1-201ENST00000311487 DSTYKQ6XUX3 929 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 GBP6Q6ZN66 633 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 AUTS2Q8WXX7 1259 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 TIFAQ96CG3 184 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 DDX27Q96GQ7 796 aaKnown RBP19.51■□□□□ 0.71
HMGA1-201ENST00000311487 UROC1Q96N76 676 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 TSPAN18Q96SJ8 248 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 TMEM175Q9BSA9 504 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 LSM14BQ9BX40 385 aaKnown RBP19.51■□□□□ 0.71
HMGA1-201ENST00000311487 EPOPA6NHQ4 379 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 EPHB6O15197 1021 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 FGF18O76093 207 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 CA8P35219 290 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 CETN1Q12798 172 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 SGSM1Q2NKQ1 1148 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 FAM171A1Q5VUB5 890 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 PHLDB3Q6NSJ2 640 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 TRIM65Q6PJ69 517 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 SLC39A11Q8N1S5 342 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 LRCH3Q96II8 777 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 SENP8Q96LD8 212 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 ZNF830Q96NB3 372 aaPredicted RBP19.51■□□□□ 0.71
HMGA1-201ENST00000311487 SMYD3Q9H7B4 428 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 SPG21Q9NZD8 308 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 AJAP1Q9UKB5 411 aaPredicted RBP19.51■□□□□ 0.71
HMGA1-201ENST00000311487 PCDHGC5Q9Y5F6 944 aa19.51■□□□□ 0.71
HMGA1-201ENST00000311487 REV3LO60673 3130 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 GOLGA6L6A8MZA4 724 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 CYB561D2O14569 222 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 N4BP1O75113 896 aaKnown RBP19.5■□□□□ 0.71
HMGA1-201ENST00000311487 ASS1P00966 412 aaKnown RBP19.5■□□□□ 0.71
HMGA1-201ENST00000311487 TKTP29401 623 aaKnown RBP19.5■□□□□ 0.71
HMGA1-201ENST00000311487 CDC25BP30305 580 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 ENPEPQ07075 957 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 ORC1Q13415 861 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 WDR44Q5JSH3 913 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 FUT10Q6P4F1 479 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 PPM1KQ8N3J5 372 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 TMEM169Q96HH4 297 aa19.5■□□□□ 0.71
HMGA1-201ENST00000311487 FAM161BQ96MY7 647 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms