RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CNR2P34972 360 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 SMTNP53814 917 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 YWHAHQ04917 246 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 TAS1R3Q7RTX0 852 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 DAW1Q8N136 415 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 SPEM1Q8N4L4 309 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 KCTD17Q8N5Z5 321 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 C4orf32Q8N8J7 132 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 BEST2Q8NFU1 509 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 NETO1Q8TDF5 533 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 SPIRE2Q8WWL2 714 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 CEP72Q9P209 647 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 MYH11P35749 1972 aa16.12■□□□□ 0.17
CCDC88B-201ENST00000301897 RALGAPA1Q6GYQ0 2036 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 HEPACAM2A8MVW5 462 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 H0YCG3 227 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 M0QZQ0 153 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 CHADO15335 359 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 XPOTO43592 962 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 OAZ2O95190 189 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 PAPSS2O95340 614 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 FGF19O95750 216 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 EPHB3P54753 998 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 KYAT1Q16773 422 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 RINT1Q6NUQ1 792 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 ZPBP2Q6X784 338 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 C1orf186Q6ZWK4 172 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 USP37Q86T82 979 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 HS6ST3Q8IZP7 471 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 ZSWIM3Q96MP5 696 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 CNTNAP3BQ96NU0 1288 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 TSPAN18Q96SJ8 248 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 CNTNAP3Q9BZ76 1288 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 YIPF1Q9Y548 306 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 ASB3Q9Y575 518 aa16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 MAP1BP46821 2468 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-201ENST00000301897 OR6C75A6NL08 312 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 E9PMD0 336 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 SLC16A4O15374 487 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 CLDN3O15551 220 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 MOSPD3O75425 235 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 CHRNB1P11230 501 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 HARSP12081 509 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 CYP3A5P20815 502 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 PAX3P23760 479 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 GUCY2CP25092 1073 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 LRPAP1P30533 357 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 PRPHP41219 470 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 VIPR2P41587 438 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 ALDH1A3P47895 512 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 KPNA1P52294 538 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 MCL1Q07820 350 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 FCHO2Q0JRZ9 810 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 ST3GAL1Q11201 340 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 MAPK7Q13164 816 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 PTGDRQ13258 359 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 SLC10A6Q3KNW5 377 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 DGKKQ5KSL6 1271 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 RNF19BQ6ZMZ0 732 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 PRR23BQ6ZRT6 265 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 FAM184AQ8NB25 1140 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 SHKBP1Q8TBC3 707 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 FAM200AQ8TCP9 573 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 RUSC1Q9BVN2 902 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 PARD6AQ9NPB6 346 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 ANKFY1Q9P2R3 1169 aa16.1■□□□□ 0.17
CCDC88B-201ENST00000301897 ARNTLO00327 626 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 SLC30A4O14863 429 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 CLTAP09496 248 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 PLS3P13797 630 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 SCP2P22307 547 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 CCNE1P24864 410 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 U2AF2P26368 475 aaKnown RBP eCLIP16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 SPEM2Q0P670 501 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 SIM2Q14190 667 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 MYBPC2Q14324 1141 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 TEAD2Q15562 447 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 DTHD1Q6ZMT9 781 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 HAUS6Q7Z4H7 955 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 RALGPS2Q86X27 583 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 CCDC83Q8IWF9 413 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 TMEM161BQ8NDZ6 487 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 ZBTB45Q96K62 511 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 ZSCAN31Q96LW9 406 aaPredicted RBP16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 OBP2AQ9NY56 170 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 KCND2Q9NZV8 630 aa16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 UBQLN1Q9UMX0 589 aaKnown RBP16.09■□□□□ 0.17
CCDC88B-201ENST00000301897 DCDC2BA2VCK2 349 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 DPYSL4O14531 572 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 MAPTP10636 758 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 HOXA6P31267 233 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 MATR3P43243 847 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 AARSP49588 968 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 SATB1Q01826 763 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 GPR17Q13304 367 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 ARHGAP29Q52LW3 1261 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 ARHGAP15Q53QZ3 475 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 ITIH5Q86UX2 942 aa16.08■□□□□ 0.16
CCDC88B-201ENST00000301897 LONP2Q86WA8 852 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms