RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 IFT43Q96FT9 208 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 FAM32AQ9Y421 112 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 GCLMP48507 274 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 KCTD17Q8N5Z5 321 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TTC13Q8NBP0 860 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 OSBPL10Q9BXB5 764 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ADAM22Q9P0K1 906 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TSR3Q9UJK0 312 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 CSADQ9Y600 493 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 LRRIQ3A6PVS8 624 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ERVK-24P63145 666 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TRIM72Q6ZMU5 477 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 GADL1Q6ZQY3 521 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ABI1Q8IZP0 508 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TNIP2Q8NFZ5 429 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 HIC2Q96JB3 615 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 MTMR4Q9NYA4 1195 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 APEX2Q9UBZ4 518 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 EIF3DO15371 548 aaKnown RBP eCLIP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 PLA2G4AP47712 749 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 GPSM2P81274 684 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 ZNF543Q08ER8 600 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 NTRK3Q16288 839 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 DDHD1Q8NEL9 900 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 OMA1Q96E52 524 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 PRPF4O43172 522 aaKnown RBP eCLIP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 RASSF9O75901 435 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 DMPKQ09013 629 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 ANO4Q32M45 955 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CENPPQ6IPU0 288 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 USP38Q8NB14 1042 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 GEMIN8Q9NWZ8 242 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 UTP6Q9NYH9 597 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 KDM3BQ7LBC6 1761 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 MYMKA6NI61 221 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 SPDYE5A6NIY4 337 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CHN1P15882 459 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 KPNB1Q14974 876 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 SPDYE7PQ495Y7 208 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 RFWD2Q8NHY2 731 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 FAM162AQ96A26 154 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CNDP1Q96KN2 507 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 ARHGEF37A1IGU5 675 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 MARK3P27448 753 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 BYSLQ13895 437 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 RRM2BQ7LG56 351 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 GPR141Q7Z602 305 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 MARCOQ9UEW3 520 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 TRIM69Q86WT6 500 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 SULF1Q8IWU6 871 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CMTM5Q96DZ9 223 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 C17orf80Q9BSJ5 609 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 RTN2O75298 545 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 LDHAP00338 332 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 UCHL3P15374 230 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CD44P16070 742 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 TMC5Q6UXY8 1006 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 ARMCX2Q7L311 632 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 KIF2BQ8N4N8 673 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 MS4A14Q96JA4 679 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 TIPINQ9BVW5 301 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 KRT7P08729 469 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 SOX6P35712 828 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 KLK7P49862 253 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 KCNQ4P56696 695 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 TROAPQ12815 778 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 TTC33Q6PID6 262 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 PODNQ7Z5L7 613 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 PLEKHA8Q96JA3 519 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 GGT7Q9UJ14 662 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 TSC22D2O75157 780 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 HSPA13P48723 471 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 KRT76Q01546 638 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 PDCD6IPQ8WUM4 868 aaKnown RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 C6orf203Q9P0P8 240 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CHMP2BQ9UQN3 213 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CDYLQ9Y232 598 aa10.34□□□□□ -0.75
COL6A3-201ENST00000295550 CORO7P57737 925 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 GCNAQ96QF7 691 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 RPF1Q9H9Y2 349 aaKnown RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 FTLP02792 175 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 DDX5P17844 614 aaKnown RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 FMO5P49326 533 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 AASDHQ4L235 1098 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 PAPD7Q5XG87 772 aaKnown RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 CDH24Q86UP0 819 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 C19orf60Q96EN9 201 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ARHGEF3Q9NR81 526 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 SYBUQ9NX95 663 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 CHD4Q14839 1912 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ICE1Q9Y2F5 2266 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 NPHP3-ACAD11A0A0J9YXS1 232 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 SFI1A8K8P3 1242 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ITPRIPL1Q6GPH6 555 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 MASTLQ96GX5 879 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 LBHD1Q9BQE6 289 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 ASNSD1Q9NWL6 643 aa10.33□□□□□ -0.76
COL6A3-201ENST00000295550 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.33□□□□□ -0.76
COL6A3-201ENST00000295550 PITPNM2Q9BZ72 1349 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms