RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 POTEJP0CG39 1038 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 BRD2P25440 801 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 BYSLQ13895 437 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 SLMAPQ14BN4 828 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 CCDC38Q502W7 563 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 ZFYVE27Q5T4F4 411 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 METTL7BQ6UX53 244 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 MICALL1Q8N3F8 863 aa19.51■□□□□ 0.71
SHKBP1-201ENST00000291842 WEE2P0C1S8 567 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 PDE4CQ08493 712 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 PLEKHA7Q6IQ23 1121 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 TRIM72Q6ZMU5 477 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 RHPN2Q8IUC4 686 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 BRSK2Q8IWQ3 736 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 RHOT1Q8IXI2 618 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 THNSL1Q8IYQ7 743 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 TMEM130Q8N3G9 435 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 SGIP1Q9BQI5 828 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 MRPL4Q9BYD3 311 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 CDC42EP4Q9H3Q1 356 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 MRPL47Q9HD33 250 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 SIP14410 1827 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 TOM1L1O75674 476 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 ITGA8P53708 1063 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 TFAMQ00059 246 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 KAZNQ674X7 775 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 TADA2BQ86TJ2 420 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 PHF13Q86YI8 300 aaPredicted RBP19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 COPS5Q92905 334 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 PGM2Q96G03 612 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 ACO2Q99798 780 aaKnown RBP19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 CCDC113Q9H0I3 377 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 TXNRD2Q9NNW7 524 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 CNTN6Q9UQ52 1028 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 LOC285556D6RIA3 1793 aa19.5■□□□□ 0.71
SHKBP1-201ENST00000291842 NOP56O00567 594 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 ASS1P00966 412 aaKnown RBP19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 PRKCBP05771 671 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 CHN1P15882 459 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 IVDP26440 423 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 ADCY8P40145 1251 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 SF3A3Q12874 501 aaKnown RBP eCLIP19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 IFT88Q13099 833 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 LONRF1Q17RB8 773 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 WDR78Q5VTH9 848 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 SLCO2A1Q92959 643 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 ASCC2Q9H1I8 757 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 PTPRFP10586 1907 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 A0A087WUV0 522 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 ZBTB42B2RXF5 422 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 RASGRF2O14827 1237 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 KRT10P13645 584 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 ADCY2Q08462 1091 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 KLF1Q13351 362 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 ZPBP2Q6X784 338 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 CEP120Q8N960 986 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 FEZF2Q8TBJ5 459 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 PPM1EQ8WY54 764 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 KCNN1Q92952 543 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 ACSF2Q96CM8 615 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 SNF8Q96H20 258 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 NLRP4Q96MN2 994 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 GPR20Q99678 358 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 OSBPL8Q9BZF1 889 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 WHRNQ9P202 907 aa19.49■□□□□ 0.71
SHKBP1-201ENST00000291842 B4GALT5O43286 388 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 CNMDO75829 334 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 KIAA0754O94854 1291 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 Q3C1V9 767 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 RNF187Q5TA31 235 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 WDR49Q8IV35 697 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 FBXO16Q8IX29 292 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 SCLT1Q96NL6 688 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 ADAM7Q9H2U9 754 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 CISHQ9NSE2 258 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 PARVAQ9NVD7 372 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 DDX20Q9UHI6 824 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 SCINQ9Y6U3 715 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 SOCS7O14512 581 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 MEFVO15553 781 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 PSTPIP1O43586 416 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 GAS8O95995 478 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 TGFB3P10600 412 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 MMP8P22894 467 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 ZNF132P52740 706 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 EFNA5P52803 228 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 C1QBPQ07021 282 aaKnown RBP19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 PTK6Q13882 451 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 MAPK6Q16659 721 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 TMEM132AQ24JP5 1023 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 C6orf118Q5T5N4 469 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 IER5Q5VY09 327 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 PACS2Q86VP3 889 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 OTUD6BQ8N6M0 293 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 ATL2Q8NHH9 583 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 MAIP1Q8WWC4 291 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 BBXQ8WY36 941 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 VCPIP1Q96JH7 1222 aa19.48■□□□□ 0.71
SHKBP1-201ENST00000291842 MCEEQ96PE7 176 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms