RNA–Protein interactions for RNA: ENST00000641899.1

SRRM4-204, Transcript of serine/arginine repetitive matrix 4, humanhuman

Gene SRRM4, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4-204ENST00000641899 NOS1P29475 1434 aa23.47■■□□□ 1.35
SRRM4-204ENST00000641899 ADGRB3O60242 1522 aa23.47■■□□□ 1.35
SRRM4-204ENST00000641899 CROCC2H7BZ55 1655 aa23.46■■□□□ 1.35
SRRM4-204ENST00000641899 C14orf37Q86TY3 774 aa23.46■■□□□ 1.35
SRRM4-204ENST00000641899 FGD6Q6ZV73 1430 aa23.44■■□□□ 1.34
SRRM4-204ENST00000641899 MEX3CQ5U5Q3 659 aaKnown RBP23.44■■□□□ 1.34
SRRM4-204ENST00000641899 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.44■■□□□ 1.34
SRRM4-204ENST00000641899 NWD1Q149M9 1564 aa23.44■■□□□ 1.34
SRRM4-204ENST00000641899 RPRD2Q5VT52 1461 aaKnown RBP23.43■■□□□ 1.34
SRRM4-204ENST00000641899 NCOA3Q9Y6Q9 1424 aa23.43■■□□□ 1.34
SRRM4-204ENST00000641899 PLEKHG1Q9ULL1 1385 aa23.43■■□□□ 1.34
SRRM4-204ENST00000641899 SPATA31A6Q5VVP1 1343 aa23.43■■□□□ 1.34
SRRM4-204ENST00000641899 LOC105371045A0A1W2PR82 267 aa23.42■■□□□ 1.34
SRRM4-204ENST00000641899 ZNF772Q68DY9 489 aaPredicted RBP23.42■■□□□ 1.34
SRRM4-204ENST00000641899 CADPS2Q86UW7 1296 aa23.41■■□□□ 1.34
SRRM4-204ENST00000641899 TBX22Q9Y458 520 aa23.4■■□□□ 1.34
SRRM4-204ENST00000641899 ATF3P18847 181 aa23.39■■□□□ 1.33
SRRM4-204ENST00000641899 PHLPP1O60346 1717 aa23.36■■□□□ 1.33
SRRM4-204ENST00000641899 RIMS2Q9UQ26 1411 aa23.36■■□□□ 1.33
SRRM4-204ENST00000641899 C19orf44Q9H6X5 657 aa23.36■■□□□ 1.33
SRRM4-204ENST00000641899 CHGAP10645 457 aaKnown RBP23.35■■□□□ 1.33
SRRM4-204ENST00000641899 ZFYVE9O95405 1425 aa23.34■■□□□ 1.33
SRRM4-204ENST00000641899 ANKRD50Q9ULJ7 1429 aa23.33■■□□□ 1.33
SRRM4-204ENST00000641899 ADGRL2O95490 1459 aa23.33■■□□□ 1.33
SRRM4-204ENST00000641899 PIK3R4Q99570 1358 aa23.33■■□□□ 1.33
SRRM4-204ENST00000641899 FAM50AQ14320 339 aaKnown RBP23.32■■□□□ 1.32
SRRM4-204ENST00000641899 RXRBP28702 533 aa23.28■■□□□ 1.32
SRRM4-204ENST00000641899 TRIM52Q96A61 297 aa23.27■■□□□ 1.32
SRRM4-204ENST00000641899 UPF1Q92900 1129 aaKnown RBP eCLIP23.26■■□□□ 1.31
SRRM4-204ENST00000641899 DIP2AQ14689 1571 aa23.26■■□□□ 1.31
SRRM4-204ENST00000641899 COL16A1Q07092 1604 aaPredicted RBP23.26■■□□□ 1.31
SRRM4-204ENST00000641899 CHD2O14647 1828 aaKnown RBP23.24■■□□□ 1.31
SRRM4-204ENST00000641899 AHDC1Q5TGY3 1603 aaPredicted RBP23.22■■□□□ 1.31
SRRM4-204ENST00000641899 AMOTL2Q9Y2J4 779 aa23.22■■□□□ 1.31
SRRM4-204ENST00000641899 TMEM131LA2VDJ0 1609 aa23.22■■□□□ 1.31
SRRM4-204ENST00000641899 LRP6O75581 1613 aa23.22■■□□□ 1.31
SRRM4-204ENST00000641899 SETD1AO15047 1707 aaKnown RBP23.2■■□□□ 1.3
SRRM4-204ENST00000641899 ADAMTS13Q76LX8 1427 aa23.2■■□□□ 1.3
SRRM4-204ENST00000641899 NUTM2BA6NNL0 878 aaPredicted RBP23.2■■□□□ 1.3
SRRM4-204ENST00000641899 NUTM2EB1AL46 878 aaPredicted RBP23.2■■□□□ 1.3
SRRM4-204ENST00000641899 NUTM2DQ5VT03 806 aaPredicted RBP23.2■■□□□ 1.3
SRRM4-204ENST00000641899 NUTM2AQ8IVF1 878 aaPredicted RBP23.2■■□□□ 1.3
SRRM4-204ENST00000641899 DCCP43146 1447 aa23.19■■□□□ 1.3
SRRM4-204ENST00000641899 BRINP3Q76B58 766 aa23.19■■□□□ 1.3
SRRM4-204ENST00000641899 GCC2Q8IWJ2 1684 aa23.19■■□□□ 1.3
SRRM4-204ENST00000641899 TRPM2O94759 1503 aa23.18■■□□□ 1.3
SRRM4-204ENST00000641899 CDK12Q9NYV4 1490 aaPredicted RBP23.17■■□□□ 1.3
SRRM4-204ENST00000641899 LRRC59Q96AG4 307 aaKnown RBP23.17■■□□□ 1.3
SRRM4-204ENST00000641899 SHPRHQ149N8 1683 aa23.16■■□□□ 1.3
SRRM4-204ENST00000641899 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.14■■□□□ 1.3
SRRM4-204ENST00000641899 AFF2P51816 1311 aa23.13■■□□□ 1.29
SRRM4-204ENST00000641899 SETD5Q9C0A6 1442 aa23.12■■□□□ 1.29
SRRM4-204ENST00000641899 ROCK1Q13464 1354 aa23.12■■□□□ 1.29
SRRM4-204ENST00000641899 FOXD1Q16676 465 aa23.11■■□□□ 1.29
SRRM4-204ENST00000641899 UNC13BO14795 1591 aa23.1■■□□□ 1.29
SRRM4-204ENST00000641899 NUP155O75694 1391 aa23.1■■□□□ 1.29
SRRM4-204ENST00000641899 RBM6P78332 1123 aaKnown RBP23.09■■□□□ 1.29
SRRM4-204ENST00000641899 ZNF326Q5BKZ1 582 aaKnown RBP23.09■■□□□ 1.29
SRRM4-204ENST00000641899 MYO5BQ9ULV0 1848 aa23.08■■□□□ 1.29
SRRM4-204ENST00000641899 NGLY1Q96IV0 654 aa23.08■■□□□ 1.29
SRRM4-204ENST00000641899 C8orf37Q96NL8 207 aa23.08■■□□□ 1.29
SRRM4-204ENST00000641899 ASXL1Q8IXJ9 1541 aa23.08■■□□□ 1.28
SRRM4-204ENST00000641899 QTRT2Q9H974 415 aaKnown RBP23.07■■□□□ 1.28
SRRM4-204ENST00000641899 PTPRUQ92729 1446 aa23.06■■□□□ 1.28
SRRM4-204ENST00000641899 MST1RQ04912 1400 aa23.04■■□□□ 1.28
SRRM4-204ENST00000641899 E9PCH4 1651 aa23.03■■□□□ 1.28
SRRM4-204ENST00000641899 IQGAP3Q86VI3 1631 aa23.03■■□□□ 1.28
SRRM4-204ENST00000641899 SETBP1Q9Y6X0 1596 aa23.01■■□□□ 1.27
SRRM4-204ENST00000641899 ADGRL3Q9HAR2 1447 aa22.99■■□□□ 1.27
SRRM4-204ENST00000641899 PNPLA6Q8IY17 1366 aa22.99■■□□□ 1.27
SRRM4-204ENST00000641899 METP08581 1390 aa22.97■■□□□ 1.27
SRRM4-204ENST00000641899 ATAD2Q6PL18 1390 aa22.97■■□□□ 1.27
SRRM4-204ENST00000641899 ADAMTS2O95450 1211 aa22.96■■□□□ 1.27
SRRM4-204ENST00000641899 RGS12O14924 1447 aa22.96■■□□□ 1.27
SRRM4-204ENST00000641899 XRN1Q8IZH2 1706 aaKnown RBP22.96■■□□□ 1.27
SRRM4-204ENST00000641899 ITGAEP38570 1179 aa22.95■■□□□ 1.26
SRRM4-204ENST00000641899 NHSL1Q5SYE7 1610 aa22.94■■□□□ 1.26
SRRM4-204ENST00000641899 TRPC5Q9UL62 973 aaPredicted RBP22.94■■□□□ 1.26
SRRM4-204ENST00000641899 DDX17Q92841 729 aaKnown RBP22.92■■□□□ 1.26
SRRM4-204ENST00000641899 USP21Q9UK80 565 aa22.92■■□□□ 1.26
SRRM4-204ENST00000641899 VGFO15240 615 aaPredicted RBP22.91■■□□□ 1.26
SRRM4-204ENST00000641899 C1orf167Q5SNV9 1468 aa22.9■■□□□ 1.26
SRRM4-204ENST00000641899 ZRANB1Q9UGI0 708 aa22.89■■□□□ 1.25
SRRM4-204ENST00000641899 NRXN3Q9Y4C0 1643 aa22.89■■□□□ 1.25
SRRM4-204ENST00000641899 PTCH1Q13635 1447 aa22.88■■□□□ 1.25
SRRM4-204ENST00000641899 SOS2Q07890 1332 aaPredicted RBP22.87■■□□□ 1.25
SRRM4-204ENST00000641899 CCDC125Q86Z20 511 aa22.87■■□□□ 1.25
SRRM4-204ENST00000641899 FNBP4Q8N3X1 1017 aaPredicted RBP22.85■■□□□ 1.25
SRRM4-204ENST00000641899 SPHKAPQ2M3C7 1700 aa22.84■■□□□ 1.25
SRRM4-204ENST00000641899 NPHP3Q7Z494 1330 aa22.82■■□□□ 1.24
SRRM4-204ENST00000641899 ORAI2Q96SN7 254 aa22.82■■□□□ 1.24
SRRM4-204ENST00000641899 RPGRIP1LQ68CZ1 1315 aa22.82■■□□□ 1.24
SRRM4-204ENST00000641899 NEXMIFQ5QGS0 1516 aa22.81■■□□□ 1.24
SRRM4-204ENST00000641899 HFM1A2PYH4 1435 aa22.81■■□□□ 1.24
SRRM4-204ENST00000641899 LRPPRCP42704 1394 aaKnown RBP22.79■■□□□ 1.24
SRRM4-204ENST00000641899 NALCNQ8IZF0 1738 aa22.79■■□□□ 1.24
SRRM4-204ENST00000641899 ROBO2Q9HCK4 1378 aa22.78■■□□□ 1.24
SRRM4-204ENST00000641899 ESCO1Q5FWF5 840 aa22.77■■□□□ 1.24
SRRM4-204ENST00000641899 LAMC1P11047 1609 aa22.77■■□□□ 1.24
SRRM4-204ENST00000641899 ATRNO75882 1429 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms