RNA–Protein interactions for RNA: ENST00000637490.1

SYNGAP1-221, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 132 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-221ENST00000637490 LONRF3Q496Y0 759 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 ZNF280DQ6N043 979 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 APBB1IPQ7Z5R6 666 aaPredicted RBP3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 CACTIN-AS1Q8N1I8 211 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 MPNDQ8N594 471 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 BRMS1Q9HCU9 246 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 SMC4Q9NTJ3 1288 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 PPP4R2Q9NY27 417 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 MAGEC2Q9UBF1 373 aaPredicted RBP3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 FRMD4BQ9Y2L6 1034 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 KNSTRNQ9Y448 316 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 PPME1Q9Y570 386 aa3.2□□□□□ -1.9
SYNGAP1-221ENST00000637490 EEA1Q15075 1411 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 TESPA1A2RU30 521 aaPredicted RBP3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 EXOC5O00471 708 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 DYNC1I1O14576 645 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 DHX16O60231 1041 aaKnown RBP3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 MARCH6O60337 910 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 COQ9O75208 318 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 SSFA2P28290 1259 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 HDGFL1Q5TGJ6 251 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 CCDC181Q5TID7 509 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 P3H3Q8IVL6 736 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 LSM14AQ8ND56 463 aaKnown RBP3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 CCDC97Q96F63 343 aaPredicted RBP3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 GZF1Q9H116 711 aaPredicted RBP3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 DONSONQ9NYP3 566 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 ABCF2Q9UG63 623 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 SYNPO2Q9UMS6 1093 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 ZBTB12Q9Y330 459 aaPredicted RBP3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 KIF3AQ9Y496 699 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 NINLQ9Y2I6 1382 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 RAD54L2Q9Y4B4 1467 aa3.19□□□□□ -1.9
SYNGAP1-221ENST00000637490 KLHL33A6NCF5 533 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 ARID3CA6NKF2 412 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 TRIM6-TRIM34B2RNG4 842 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 TULP2O00295 520 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 MPHOSPH10O00566 681 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 IPO8O15397 1037 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 IPO7O95373 1038 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 ITGAEP38570 1179 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 PEX19P40855 299 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 TRDNQ13061 729 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 HSP90B2PQ58FF3 399 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 CT47A1Q5JQC4 288 aaPredicted RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 CREBRFQ8IUR6 639 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 SPRYD3Q8NCJ5 442 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 ZCRB1Q8TBF4 217 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 DCAF11Q8TEB1 546 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 SPATA32Q96LK8 384 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 TIGD1Q96MW7 591 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 CCDC85AQ96PX6 553 aaPredicted RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 LARP6Q9BRS8 491 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 TRIM34Q9BYJ4 488 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 MED4Q9NPJ6 270 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 JADE2Q9NQC1 790 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 FAM13BQ9NYF5 915 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 CGNQ9P2M7 1197 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 RBM27Q9P2N5 1060 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 ISY1Q9ULR0 285 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 SMC3Q9UQE7 1217 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 RPS6KL1Q9Y6S9 549 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 RAD50Q92878 1312 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 SYNRGQ9UMZ2 1314 aa3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 ZC3H4Q9UPT8 1303 aaKnown RBP3.18□□□□□ -1.9
SYNGAP1-221ENST00000637490 PPP1R12AO14974 1030 aaPredicted RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 SMARCA5O60264 1052 aaPredicted RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 PRR29P0C7W0 189 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 SETSIPP0DME0 302 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 CD151P48509 253 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 TDO2P48775 406 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 FOXD4Q12950 439 aaPredicted RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 NEUROD2Q15784 382 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 RGL3Q3MIN7 710 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 PUS10Q3MIT2 529 aaKnown RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 GJC2Q5T442 439 aaPredicted RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 SWT1Q5T5J6 900 aaKnown RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 ZKSCAN2Q63HK3 967 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 KIAA1211Q6ZU35 1233 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 RPAINQ86UA6 219 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 JMYQ8N9B5 988 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 MORC4Q8TE76 937 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 ERCC4Q92889 916 aaPredicted RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 NUCKS1Q9H1E3 243 aaKnown RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 SPINK5Q9NQ38 1064 aaPredicted RBP3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 CALCOCO1Q9P1Z2 691 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 SUGT1Q9Y2Z0 365 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 PAXBP1Q9Y5B6 917 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 SCRIBQ14160 1630 aa3.17□□□□□ -1.9
SYNGAP1-221ENST00000637490 EPB41L2O43491 1005 aaKnown RBP3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 OFD1O75665 1012 aa3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 TPM3P06753 285 aa3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 FAM200BP0CF97 657 aa3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 COPB2P35606 906 aa3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 KCNJ4P48050 445 aa3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 GTF2A1P52655 376 aaPredicted RBP3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 PSMC1P62191 440 aaKnown RBP3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 SARNPP82979 210 aaKnown RBP3.16□□□□□ -1.9
SYNGAP1-221ENST00000637490 GABPB1Q06547 395 aaPredicted RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms