RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 SENP3Q9H4L4 574 aaPredicted RBP28.26■■■□□ 2.11
CLN6-220ENST00000637450 NUP155O75694 1391 aa28.24■■■□□ 2.11
CLN6-220ENST00000637450 MED1Q15648 1581 aaPredicted RBP28.24■■■□□ 2.11
CLN6-220ENST00000637450 RIMS2Q9UQ26 1411 aa28.24■■■□□ 2.11
CLN6-220ENST00000637450 PLEKHG1Q9ULL1 1385 aa28.24■■■□□ 2.11
CLN6-220ENST00000637450 PPP1R15AO75807 674 aaPredicted RBP28.22■■■□□ 2.11
CLN6-220ENST00000637450 CHGAP10645 457 aaKnown RBP28.22■■■□□ 2.11
CLN6-220ENST00000637450 XIRP1Q702N8 1843 aaKnown RBP28.22■■■□□ 2.11
CLN6-220ENST00000637450 GCC2Q8IWJ2 1684 aa28.22■■■□□ 2.11
CLN6-220ENST00000637450 RBM33Q96EV2 1170 aaKnown RBP28.21■■■□□ 2.11
CLN6-220ENST00000637450 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.2■■■□□ 2.1
CLN6-220ENST00000637450 TMEM131LA2VDJ0 1609 aa28.2■■■□□ 2.1
CLN6-220ENST00000637450 FAM135BQ49AJ0 1406 aa28.19■■■□□ 2.1
CLN6-220ENST00000637450 TBX22Q9Y458 520 aa28.18■■■□□ 2.1
CLN6-220ENST00000637450 IQGAP3Q86VI3 1631 aa28.18■■■□□ 2.1
CLN6-220ENST00000637450 E9PCH4 1651 aa28.17■■■□□ 2.1
CLN6-220ENST00000637450 NKTRP30414 1462 aaKnown RBP28.16■■■□□ 2.1
CLN6-220ENST00000637450 NWD1Q149M9 1564 aa28.15■■■□□ 2.1
CLN6-220ENST00000637450 NUTM2DQ5VT03 806 aaPredicted RBP28.13■■■□□ 2.09
CLN6-220ENST00000637450 MYO5BQ9ULV0 1848 aa28.13■■■□□ 2.09
CLN6-220ENST00000637450 PHF23Q9BUL5 403 aaPredicted RBP28.12■■■□□ 2.09
CLN6-220ENST00000637450 MSH6P52701 1360 aa28.09■■■□□ 2.09
CLN6-220ENST00000637450 ADAMTS13Q76LX8 1427 aa28.08■■■□□ 2.09
CLN6-220ENST00000637450 RRBP1Q9P2E9 1410 aaKnown RBP28.08■■■□□ 2.09
CLN6-220ENST00000637450 SLAIN2Q9P270 581 aa28.06■■■□□ 2.08
CLN6-220ENST00000637450 CHD2O14647 1828 aaKnown RBP28.04■■■□□ 2.08
CLN6-220ENST00000637450 NCOA3Q9Y6Q9 1424 aa28.03■■■□□ 2.08
CLN6-220ENST00000637450 PIK3R4Q99570 1358 aa28.03■■■□□ 2.08
CLN6-220ENST00000637450 ROBO1Q9Y6N7 1651 aa27.99■■■□□ 2.07
CLN6-220ENST00000637450 NAIPQ13075 1403 aa27.99■■■□□ 2.07
CLN6-220ENST00000637450 DIP2AQ14689 1571 aa27.99■■■□□ 2.07
CLN6-220ENST00000637450 RGS17Q9UGC6 210 aaPredicted RBP27.97■■■□□ 2.07
CLN6-220ENST00000637450 AMOTL2Q9Y2J4 779 aa27.97■■■□□ 2.07
CLN6-220ENST00000637450 ZNF326Q5BKZ1 582 aaKnown RBP27.96■■■□□ 2.07
CLN6-220ENST00000637450 C14orf37Q86TY3 774 aa27.96■■■□□ 2.07
CLN6-220ENST00000637450 C19orf44Q9H6X5 657 aa27.95■■■□□ 2.06
CLN6-220ENST00000637450 PTPRUQ92729 1446 aa27.93■■■□□ 2.06
CLN6-220ENST00000637450 CADPS2Q86UW7 1296 aa27.92■■■□□ 2.06
CLN6-220ENST00000637450 TRPM2O94759 1503 aa27.92■■■□□ 2.06
CLN6-220ENST00000637450 SPHKAPQ2M3C7 1700 aa27.91■■■□□ 2.06
CLN6-220ENST00000637450 ATF3P18847 181 aa27.89■■■□□ 2.06
CLN6-220ENST00000637450 HFM1A2PYH4 1435 aa27.88■■■□□ 2.05
CLN6-220ENST00000637450 TRIM52Q96A61 297 aa27.88■■■□□ 2.05
CLN6-220ENST00000637450 SETBP1Q9Y6X0 1596 aa27.86■■■□□ 2.05
CLN6-220ENST00000637450 METP08581 1390 aa27.85■■■□□ 2.05
CLN6-220ENST00000637450 JCADQ9P266 1359 aa27.85■■■□□ 2.05
CLN6-220ENST00000637450 NRXN3Q9Y4C0 1643 aa27.84■■■□□ 2.05
CLN6-220ENST00000637450 CLTCL1P53675 1640 aa27.83■■■□□ 2.05
CLN6-220ENST00000637450 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.81■■■□□ 2.04
CLN6-220ENST00000637450 SLC4A1APQ9BWU0 796 aaKnown RBP27.81■■■□□ 2.04
CLN6-220ENST00000637450 PHLPP1O60346 1717 aa27.81■■■□□ 2.04
CLN6-220ENST00000637450 POTEAQ6S8J7 498 aa27.8■■■□□ 2.04
CLN6-220ENST00000637450 NEXMIFQ5QGS0 1516 aa27.79■■■□□ 2.04
CLN6-220ENST00000637450 BRINP3Q76B58 766 aa27.77■■■□□ 2.04
CLN6-220ENST00000637450 DCCP43146 1447 aa27.76■■■□□ 2.04
CLN6-220ENST00000637450 XRN1Q8IZH2 1706 aaKnown RBP27.76■■■□□ 2.03
CLN6-220ENST00000637450 VGFO15240 615 aaPredicted RBP27.76■■■□□ 2.03
CLN6-220ENST00000637450 COL16A1Q07092 1604 aaPredicted RBP27.75■■■□□ 2.03
CLN6-220ENST00000637450 RPGRIP1LQ68CZ1 1315 aa27.74■■■□□ 2.03
CLN6-220ENST00000637450 SPATA31A6Q5VVP1 1343 aa27.72■■■□□ 2.03
CLN6-220ENST00000637450 AHDC1Q5TGY3 1603 aaPredicted RBP27.71■■■□□ 2.03
CLN6-220ENST00000637450 KIF1BO60333 1816 aa27.7■■■□□ 2.02
CLN6-220ENST00000637450 MST1RQ04912 1400 aa27.69■■■□□ 2.02
CLN6-220ENST00000637450 FOXD1Q16676 465 aa27.68■■■□□ 2.02
CLN6-220ENST00000637450 ADGRL3Q9HAR2 1447 aa27.67■■■□□ 2.02
CLN6-220ENST00000637450 LRP6O75581 1613 aa27.63■■■□□ 2.01
CLN6-220ENST00000637450 ASXL1Q8IXJ9 1541 aa27.63■■■□□ 2.01
CLN6-220ENST00000637450 MEX3CQ5U5Q3 659 aaKnown RBP27.62■■■□□ 2.01
CLN6-220ENST00000637450 PTCH1Q13635 1447 aa27.61■■■□□ 2.01
CLN6-220ENST00000637450 MPHOSPH9Q99550 1183 aa27.61■■■□□ 2.01
CLN6-220ENST00000637450 ROBO2Q9HCK4 1378 aa27.6■■■□□ 2.01
CLN6-220ENST00000637450 SETD5Q9C0A6 1442 aa27.59■■■□□ 2.01
CLN6-220ENST00000637450 LRRC59Q96AG4 307 aaKnown RBP27.59■■■□□ 2.01
CLN6-220ENST00000637450 SHPRHQ149N8 1683 aa27.57■■■□□ 2
CLN6-220ENST00000637450 ZNF772Q68DY9 489 aaPredicted RBP27.57■■■□□ 2
CLN6-220ENST00000637450 DDX17Q92841 729 aaKnown RBP27.57■■■□□ 2
CLN6-220ENST00000637450 CCDC144AA2RUR9 1427 aa27.57■■■□□ 2
CLN6-220ENST00000637450 PRAG1Q86YV5 1406 aa27.57■■■□□ 2
CLN6-220ENST00000637450 SETD1AO15047 1707 aaKnown RBP27.55■■■□□ 2
CLN6-220ENST00000637450 NUTM2BA6NNL0 878 aaPredicted RBP27.55■■■□□ 2
CLN6-220ENST00000637450 NUTM2EB1AL46 878 aaPredicted RBP27.55■■■□□ 2
CLN6-220ENST00000637450 RGL3Q3MIN7 710 aa27.55■■■□□ 2
CLN6-220ENST00000637450 NUTM2AQ8IVF1 878 aaPredicted RBP27.55■■■□□ 2
CLN6-220ENST00000637450 ADGRF5Q8IZF2 1346 aa27.55■■■□□ 2
CLN6-220ENST00000637450 C1orf167Q5SNV9 1468 aa27.55■■■□□ 2
CLN6-220ENST00000637450 NALCNQ8IZF0 1738 aa27.53■■■□□ 2
CLN6-220ENST00000637450 PPLO60437 1756 aa27.53■■■□□ 2
CLN6-220ENST00000637450 SPATA31E1Q6ZUB1 1445 aa27.52■■■□□ 2
CLN6-220ENST00000637450 NHSL1Q5SYE7 1610 aa27.51■■□□□ 1.99
CLN6-220ENST00000637450 ACIN1Q9UKV3 1341 aaKnown RBP27.5■■□□□ 1.99
CLN6-220ENST00000637450 ORAI2Q96SN7 254 aa27.5■■□□□ 1.99
CLN6-220ENST00000637450 ANKRD30BQ9BXX2 1392 aa27.49■■□□□ 1.99
CLN6-220ENST00000637450 PNPLA6Q8IY17 1366 aa27.47■■□□□ 1.99
CLN6-220ENST00000637450 SOS2Q07890 1332 aaPredicted RBP27.44■■□□□ 1.98
CLN6-220ENST00000637450 STK26Q9P289 416 aa27.43■■□□□ 1.98
CLN6-220ENST00000637450 AFF2P51816 1311 aa27.42■■□□□ 1.98
CLN6-220ENST00000637450 RXRBP28702 533 aa27.42■■□□□ 1.98
CLN6-220ENST00000637450 LRPPRCP42704 1394 aaKnown RBP27.41■■□□□ 1.98
CLN6-220ENST00000637450 TMEM132EQ6IEE7 984 aa27.41■■□□□ 1.98
CLN6-220ENST00000637450 WAPLQ7Z5K2 1190 aa27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms