RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SPATA31A6Q5VVP1 1343 aa17.73■□□□□ 0.43
CLN3-257ENST00000637110 SLAIN2Q9P270 581 aa17.73■□□□□ 0.43
CLN3-257ENST00000637110 TRIM52Q96A61 297 aa17.72■□□□□ 0.43
CLN3-257ENST00000637110 EFCAB6Q5THR3 1501 aa17.72■□□□□ 0.43
CLN3-257ENST00000637110 NWD1Q149M9 1564 aa17.71■□□□□ 0.43
CLN3-257ENST00000637110 ADGRL2O95490 1459 aa17.71■□□□□ 0.43
CLN3-257ENST00000637110 COL16A1Q07092 1604 aaPredicted RBP17.7■□□□□ 0.42
CLN3-257ENST00000637110 RBM33Q96EV2 1170 aaKnown RBP17.7■□□□□ 0.42
CLN3-257ENST00000637110 SLC26A8Q96RN1 970 aa17.7■□□□□ 0.42
CLN3-257ENST00000637110 TET3O43151 1660 aa17.7■□□□□ 0.42
CLN3-257ENST00000637110 ANKRD50Q9ULJ7 1429 aa17.69■□□□□ 0.42
CLN3-257ENST00000637110 RXRBP28702 533 aa17.68■□□□□ 0.42
CLN3-257ENST00000637110 LRP6O75581 1613 aa17.67■□□□□ 0.42
CLN3-257ENST00000637110 CDK12Q9NYV4 1490 aaPredicted RBP17.66■□□□□ 0.42
CLN3-257ENST00000637110 SHPRHQ149N8 1683 aa17.65■□□□□ 0.42
CLN3-257ENST00000637110 BCANQ96GW7 911 aa17.65■□□□□ 0.42
CLN3-257ENST00000637110 ROCK1Q13464 1354 aa17.64■□□□□ 0.41
CLN3-257ENST00000637110 IDI1Q13907 227 aa17.62■□□□□ 0.41
CLN3-257ENST00000637110 CHD2O14647 1828 aaKnown RBP17.61■□□□□ 0.41
CLN3-257ENST00000637110 NCOA3Q9Y6Q9 1424 aa17.61■□□□□ 0.41
CLN3-257ENST00000637110 ADGRB3O60242 1522 aa17.61■□□□□ 0.41
CLN3-257ENST00000637110 AHDC1Q5TGY3 1603 aaPredicted RBP17.61■□□□□ 0.41
CLN3-257ENST00000637110 LMTK2Q8IWU2 1503 aa17.59■□□□□ 0.41
CLN3-257ENST00000637110 C14orf37Q86TY3 774 aa17.59■□□□□ 0.41
CLN3-257ENST00000637110 CADPS2Q86UW7 1296 aa17.58■□□□□ 0.4
CLN3-257ENST00000637110 SRCAPQ6ZRS2 3230 aa17.58■□□□□ 0.4
CLN3-257ENST00000637110 RRBP1Q9P2E9 1410 aaKnown RBP17.57■□□□□ 0.4
CLN3-257ENST00000637110 HDGFP51858 240 aaKnown RBP17.56■□□□□ 0.4
CLN3-257ENST00000637110 FOXD1Q16676 465 aa17.56■□□□□ 0.4
CLN3-257ENST00000637110 NUP155O75694 1391 aa17.55■□□□□ 0.4
CLN3-257ENST00000637110 PLEKHG1Q9ULL1 1385 aa17.55■□□□□ 0.4
CLN3-257ENST00000637110 ATF3P18847 181 aa17.55■□□□□ 0.4
CLN3-257ENST00000637110 SLC52A1Q9NWF4 448 aa17.55■□□□□ 0.4
CLN3-257ENST00000637110 PPP1R15AO75807 674 aaPredicted RBP17.54■□□□□ 0.4
CLN3-257ENST00000637110 AFF2P51816 1311 aa17.53■□□□□ 0.4
CLN3-257ENST00000637110 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.53■□□□□ 0.4
CLN3-257ENST00000637110 NUTM2BA6NNL0 878 aaPredicted RBP17.53■□□□□ 0.4
CLN3-257ENST00000637110 NUTM2EB1AL46 878 aaPredicted RBP17.53■□□□□ 0.4
CLN3-257ENST00000637110 NUTM2AQ8IVF1 878 aaPredicted RBP17.53■□□□□ 0.4
CLN3-257ENST00000637110 C19orf44Q9H6X5 657 aa17.53■□□□□ 0.4
CLN3-257ENST00000637110 NOS1P29475 1434 aa17.53■□□□□ 0.4
CLN3-257ENST00000637110 UNC13BO14795 1591 aa17.53■□□□□ 0.4
CLN3-257ENST00000637110 CHGAP10645 457 aaKnown RBP17.51■□□□□ 0.39
CLN3-257ENST00000637110 DIP2AQ14689 1571 aa17.51■□□□□ 0.39
CLN3-257ENST00000637110 RPRD2Q5VT52 1461 aaKnown RBP17.5■□□□□ 0.39
CLN3-257ENST00000637110 RGS12O14924 1447 aa17.5■□□□□ 0.39
CLN3-257ENST00000637110 RBM6P78332 1123 aaKnown RBP17.5■□□□□ 0.39
CLN3-257ENST00000637110 TBX22Q9Y458 520 aa17.5■□□□□ 0.39
CLN3-257ENST00000637110 ZFYVE9O95405 1425 aa17.49■□□□□ 0.39
CLN3-257ENST00000637110 NUTM2DQ5VT03 806 aaPredicted RBP17.49■□□□□ 0.39
CLN3-257ENST00000637110 GCC2Q8IWJ2 1684 aa17.48■□□□□ 0.39
CLN3-257ENST00000637110 RIMS2Q9UQ26 1411 aa17.48■□□□□ 0.39
CLN3-257ENST00000637110 MYO5BQ9ULV0 1848 aa17.48■□□□□ 0.39
CLN3-257ENST00000637110 BRINP3Q76B58 766 aa17.47■□□□□ 0.39
CLN3-257ENST00000637110 QTRT2Q9H974 415 aaKnown RBP17.47■□□□□ 0.39
CLN3-257ENST00000637110 ZRANB1Q9UGI0 708 aa17.47■□□□□ 0.39
CLN3-257ENST00000637110 ATAD2Q6PL18 1390 aa17.46■□□□□ 0.39
CLN3-257ENST00000637110 PIK3R4Q99570 1358 aa17.46■□□□□ 0.39
CLN3-257ENST00000637110 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.46■□□□□ 0.39
CLN3-257ENST00000637110 IQGAP3Q86VI3 1631 aa17.46■□□□□ 0.39
CLN3-257ENST00000637110 SETD5Q9C0A6 1442 aa17.46■□□□□ 0.39
CLN3-257ENST00000637110 NGLY1Q96IV0 654 aa17.45■□□□□ 0.38
CLN3-257ENST00000637110 C8orf37Q96NL8 207 aa17.45■□□□□ 0.38
CLN3-257ENST00000637110 E9PCH4 1651 aa17.44■□□□□ 0.38
CLN3-257ENST00000637110 DCCP43146 1447 aa17.44■□□□□ 0.38
CLN3-257ENST00000637110 NAIPQ13075 1403 aa17.44■□□□□ 0.38
CLN3-257ENST00000637110 ASXL1Q8IXJ9 1541 aa17.43■□□□□ 0.38
CLN3-257ENST00000637110 LRRC59Q96AG4 307 aaKnown RBP17.43■□□□□ 0.38
CLN3-257ENST00000637110 TMEM131LA2VDJ0 1609 aa17.43■□□□□ 0.38
CLN3-257ENST00000637110 NHSL1Q5SYE7 1610 aa17.42■□□□□ 0.38
CLN3-257ENST00000637110 TRPM2O94759 1503 aa17.41■□□□□ 0.38
CLN3-257ENST00000637110 HFM1A2PYH4 1435 aa17.39■□□□□ 0.38
CLN3-257ENST00000637110 ADAMTS13Q76LX8 1427 aa17.39■□□□□ 0.38
CLN3-257ENST00000637110 AMOTL2Q9Y2J4 779 aa17.37■□□□□ 0.37
CLN3-257ENST00000637110 ZNF326Q5BKZ1 582 aaKnown RBP17.36■□□□□ 0.37
CLN3-257ENST00000637110 SLC4A1APQ9BWU0 796 aaKnown RBP17.36■□□□□ 0.37
CLN3-257ENST00000637110 PNPLA6Q8IY17 1366 aa17.36■□□□□ 0.37
CLN3-257ENST00000637110 CCDC125Q86Z20 511 aa17.35■□□□□ 0.37
CLN3-257ENST00000637110 MST1RQ04912 1400 aa17.35■□□□□ 0.37
CLN3-257ENST00000637110 SETBP1Q9Y6X0 1596 aa17.34■□□□□ 0.37
CLN3-257ENST00000637110 TRPC5Q9UL62 973 aaPredicted RBP17.33■□□□□ 0.36
CLN3-257ENST00000637110 SPHKAPQ2M3C7 1700 aa17.33■□□□□ 0.36
CLN3-257ENST00000637110 ADAMTS2O95450 1211 aa17.32■□□□□ 0.36
CLN3-257ENST00000637110 USP21Q9UK80 565 aa17.32■□□□□ 0.36
CLN3-257ENST00000637110 PTPRUQ92729 1446 aa17.3■□□□□ 0.36
CLN3-257ENST00000637110 XRN1Q8IZH2 1706 aaKnown RBP17.3■□□□□ 0.36
CLN3-257ENST00000637110 EP400Q96L91 3159 aa17.29■□□□□ 0.36
CLN3-257ENST00000637110 DDX17Q92841 729 aaKnown RBP17.27■□□□□ 0.36
CLN3-257ENST00000637110 PTCH1Q13635 1447 aa17.27■□□□□ 0.35
CLN3-257ENST00000637110 ADGRL3Q9HAR2 1447 aa17.26■□□□□ 0.35
CLN3-257ENST00000637110 ATRNO75882 1429 aa17.25■□□□□ 0.35
CLN3-257ENST00000637110 FNBP4Q8N3X1 1017 aaPredicted RBP17.25■□□□□ 0.35
CLN3-257ENST00000637110 MPHOSPH9Q99550 1183 aa17.25■□□□□ 0.35
CLN3-257ENST00000637110 LAMC1P11047 1609 aa17.24■□□□□ 0.35
CLN3-257ENST00000637110 CLTCL1P53675 1640 aa17.24■□□□□ 0.35
CLN3-257ENST00000637110 NRXN3Q9Y4C0 1643 aa17.22■□□□□ 0.35
CLN3-257ENST00000637110 NALCNQ8IZF0 1738 aa17.22■□□□□ 0.35
CLN3-257ENST00000637110 KIF1BO60333 1816 aa17.22■□□□□ 0.35
CLN3-257ENST00000637110 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.35
CLN3-257ENST00000637110 C1orf167Q5SNV9 1468 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms