RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TROQ12816 1431 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-214ENST00000637038 FAM135BQ49AJ0 1406 aa5.41□□□□□ -1.54
SCN1A-214ENST00000637038 ATP10BO94823 1461 aa5.41□□□□□ -1.54
SCN1A-214ENST00000637038 ARXQ96QS3 562 aa5.41□□□□□ -1.54
SCN1A-214ENST00000637038 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.41□□□□□ -1.54
SCN1A-214ENST00000637038 NEURL4Q96JN8 1562 aa5.41□□□□□ -1.54
SCN1A-214ENST00000637038 MLECQ14165 292 aa5.4□□□□□ -1.54
SCN1A-214ENST00000637038 RRP7BPQ9NSQ0 103 aa5.4□□□□□ -1.54
SCN1A-214ENST00000637038 ABCC3O15438 1527 aa5.4□□□□□ -1.54
SCN1A-214ENST00000637038 HIRIP3Q9BW71 556 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-214ENST00000637038 CCDC7Q96M83 1385 aa5.4□□□□□ -1.54
SCN1A-214ENST00000637038 KIAA1210Q9ULL0 1709 aa5.4□□□□□ -1.55
SCN1A-214ENST00000637038 A2ML1A8K2U0 1454 aa5.4□□□□□ -1.55
SCN1A-214ENST00000637038 HSPA5P11021 654 aaKnown RBP5.4□□□□□ -1.55
SCN1A-214ENST00000637038 RBM6P78332 1123 aaKnown RBP5.4□□□□□ -1.55
SCN1A-214ENST00000637038 RSPH4AQ5TD94 716 aa5.4□□□□□ -1.55
SCN1A-214ENST00000637038 PPP4R2Q9NY27 417 aa5.4□□□□□ -1.55
SCN1A-214ENST00000637038 MYO3AQ8NEV4 1616 aa5.39□□□□□ -1.55
SCN1A-214ENST00000637038 NCOA3Q9Y6Q9 1424 aa5.39□□□□□ -1.55
SCN1A-214ENST00000637038 CHIC2Q9UKJ5 165 aa5.39□□□□□ -1.55
SCN1A-214ENST00000637038 NLRP1Q9C000 1473 aa5.39□□□□□ -1.55
SCN1A-214ENST00000637038 MROH2AA6NES4 1674 aa5.39□□□□□ -1.55
SCN1A-214ENST00000637038 ZNF644Q9H582 1327 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-214ENST00000637038 MRS2Q9HD23 443 aa5.39□□□□□ -1.55
SCN1A-214ENST00000637038 PODXL2Q9NZ53 605 aa5.39□□□□□ -1.55
SCN1A-214ENST00000637038 RBM19Q9Y4C8 960 aaKnown RBP5.39□□□□□ -1.55
SCN1A-214ENST00000637038 LRPPRCP42704 1394 aaKnown RBP5.38□□□□□ -1.55
SCN1A-214ENST00000637038 MPHOSPH9Q99550 1183 aa5.38□□□□□ -1.55
SCN1A-214ENST00000637038 MSH6P52701 1360 aa5.38□□□□□ -1.55
SCN1A-214ENST00000637038 COL17A1Q9UMD9 1497 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-214ENST00000637038 SHPRHQ149N8 1683 aa5.38□□□□□ -1.55
SCN1A-214ENST00000637038 KIAA1107Q9UPP5 1409 aa5.38□□□□□ -1.55
SCN1A-214ENST00000637038 INO80Q9ULG1 1556 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-214ENST00000637038 BAG6P46379 1132 aa5.37□□□□□ -1.55
SCN1A-214ENST00000637038 NPM3O75607 178 aaKnown RBP5.37□□□□□ -1.55
SCN1A-214ENST00000637038 UPF1Q92900 1129 aaKnown RBP eCLIP5.37□□□□□ -1.55
SCN1A-214ENST00000637038 SLC4A1APQ9BWU0 796 aaKnown RBP5.37□□□□□ -1.55
SCN1A-214ENST00000637038 NUTM2BA6NNL0 878 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-214ENST00000637038 NUTM2EB1AL46 878 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-214ENST00000637038 NUTM2DQ5VT03 806 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-214ENST00000637038 NUTM2AQ8IVF1 878 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-214ENST00000637038 SCAPERQ9BY12 1400 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 FANCIQ9NVI1 1328 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 YY1P25490 414 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 NBPF14Q5TI25 921 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 GPRASP1Q5JY77 1395 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 CAMSAP1Q5T5Y3 1602 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 ABCC1P33527 1531 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 ZBED9Q6R2W3 1325 aa5.36□□□□□ -1.55
SCN1A-214ENST00000637038 ROCK2O75116 1388 aaKnown RBP5.35□□□□□ -1.55
SCN1A-214ENST00000637038 FAM9BQ8IZU0 186 aa5.35□□□□□ -1.55
SCN1A-214ENST00000637038 KIF7Q2M1P5 1343 aa5.35□□□□□ -1.55
SCN1A-214ENST00000637038 CLTCL1P53675 1640 aa5.35□□□□□ -1.55
SCN1A-214ENST00000637038 L3MBTL2Q969R5 705 aa5.35□□□□□ -1.55
SCN1A-214ENST00000637038 A2MP01023 1474 aa5.35□□□□□ -1.55
SCN1A-214ENST00000637038 ANO8Q9HCE9 1232 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-214ENST00000637038 SIGLEC1Q9BZZ2 1709 aa5.35□□□□□ -1.55
SCN1A-214ENST00000637038 NPHP4O75161 1426 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-214ENST00000637038 SYCP2Q9BX26 1530 aa5.34□□□□□ -1.55
SCN1A-214ENST00000637038 DUOX2Q9NRD8 1548 aa5.34□□□□□ -1.55
SCN1A-214ENST00000637038 MLH3Q9UHC1 1453 aa5.34□□□□□ -1.55
SCN1A-214ENST00000637038 PRKRIP1Q9H875 184 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-214ENST00000637038 POLR3GLQ9BT43 218 aa5.34□□□□□ -1.55
SCN1A-214ENST00000637038 PPP1R1BQ9UD71 204 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-214ENST00000637038 CFDP1Q9UEE9 299 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-214ENST00000637038 STAG3Q9UJ98 1225 aa5.34□□□□□ -1.55
SCN1A-214ENST00000637038 CADPS2Q86UW7 1296 aa5.34□□□□□ -1.56
SCN1A-214ENST00000637038 TRPC5Q9UL62 973 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-214ENST00000637038 TNRQ92752 1358 aa5.33□□□□□ -1.56
SCN1A-214ENST00000637038 ANKRD30AQ9BXX3 1397 aa5.33□□□□□ -1.56
SCN1A-214ENST00000637038 PRAG1Q86YV5 1406 aa5.33□□□□□ -1.56
SCN1A-214ENST00000637038 EIF2AK4Q9P2K8 1649 aaKnown RBP5.33□□□□□ -1.56
SCN1A-214ENST00000637038 ANP32AP39687 249 aaKnown RBP5.33□□□□□ -1.56
SCN1A-214ENST00000637038 SMG6Q86US8 1419 aaKnown RBP5.33□□□□□ -1.56
SCN1A-214ENST00000637038 PPLO60437 1756 aa5.33□□□□□ -1.56
SCN1A-214ENST00000637038 PLCH2O75038 1416 aa5.33□□□□□ -1.56
SCN1A-214ENST00000637038 TET3O43151 1660 aa5.33□□□□□ -1.56
SCN1A-214ENST00000637038 SENP3-EIF4A1A0A087X0R7 540 aa5.33□□□□□ -1.56
SCN1A-214ENST00000637038 HAP1P54257 671 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-214ENST00000637038 PARD3Q8TEW0 1356 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 KIDINS220Q9ULH0 1771 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 ABCA6Q8N139 1617 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 MAPK8IP2Q13387 824 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-214ENST00000637038 PIK3C2BO00750 1634 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 CCDC141Q6ZP82 1450 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 NINLQ9Y2I6 1382 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 ZNF326Q5BKZ1 582 aaKnown RBP5.32□□□□□ -1.56
SCN1A-214ENST00000637038 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.32□□□□□ -1.56
SCN1A-214ENST00000637038 TMC1Q8TDI8 760 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 TRPM2O94759 1503 aa5.32□□□□□ -1.56
SCN1A-214ENST00000637038 KTN1Q86UP2 1357 aaKnown RBP5.32□□□□□ -1.56
SCN1A-214ENST00000637038 TSPY4P0CV99 314 aa5.31□□□□□ -1.56
SCN1A-214ENST00000637038 TSPY10P0CW01 314 aa5.31□□□□□ -1.56
SCN1A-214ENST00000637038 ATF3P18847 181 aa5.31□□□□□ -1.56
SCN1A-214ENST00000637038 RTL5Q5HYW3 569 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-214ENST00000637038 ZNF142P52746 1687 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-214ENST00000637038 NRXN1Q9ULB1 1477 aa5.31□□□□□ -1.56
SCN1A-214ENST00000637038 BLMP54132 1417 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-214ENST00000637038 CCDC136Q96JN2 1154 aa5.31□□□□□ -1.56
SCN1A-214ENST00000637038 NWD1Q149M9 1564 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms