RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 CFAP70Q5T0N1 1121 aa21.35■■□□□ 1.01
CLN3-251ENST00000636853 KIAA1210Q9ULL0 1709 aa21.34■■□□□ 1.01
CLN3-251ENST00000636853 ADGRB3O60242 1522 aa21.34■■□□□ 1.01
CLN3-251ENST00000636853 SIGLEC1Q9BZZ2 1709 aa21.33■■□□□ 1
CLN3-251ENST00000636853 PER1O15534 1290 aaPredicted RBP21.31■■□□□ 1
CLN3-251ENST00000636853 NOS1P29475 1434 aa21.31■■□□□ 1
CLN3-251ENST00000636853 FKBP8Q14318 412 aa21.3■■□□□ 1
CLN3-251ENST00000636853 PANK3Q9H999 370 aa21.3■■□□□ 1
CLN3-251ENST00000636853 RALBP1Q15311 655 aa21.3■■□□□ 1
CLN3-251ENST00000636853 TMC1Q8TDI8 760 aa21.29■■□□□ 1
CLN3-251ENST00000636853 ZMYM4Q5VZL5 1548 aa21.28■■□□□ 1
CLN3-251ENST00000636853 MYBBP1AQ9BQG0 1328 aaKnown RBP21.28■■□□□ 1
CLN3-251ENST00000636853 KTN1Q86UP2 1357 aaKnown RBP21.28■■□□□ 1
CLN3-251ENST00000636853 NRXN1Q9ULB1 1477 aa21.27■■□□□ 1
CLN3-251ENST00000636853 EIF3AQ14152 1382 aaKnown RBP21.26■□□□□ 0.99
CLN3-251ENST00000636853 SYNMO15061 1565 aa21.26■□□□□ 0.99
CLN3-251ENST00000636853 PPLO60437 1756 aa21.26■□□□□ 0.99
CLN3-251ENST00000636853 ZBED9Q6R2W3 1325 aa21.25■□□□□ 0.99
CLN3-251ENST00000636853 ZC3H13Q5T200 1668 aaKnown RBP21.25■□□□□ 0.99
CLN3-251ENST00000636853 PNISRQ8TF01 805 aaKnown RBP21.25■□□□□ 0.99
CLN3-251ENST00000636853 CC2D1BQ5T0F9 858 aaKnown RBP21.24■□□□□ 0.99
CLN3-251ENST00000636853 PARD3Q8TEW0 1356 aa21.24■□□□□ 0.99
CLN3-251ENST00000636853 ARHGAP31Q2M1Z3 1444 aa21.24■□□□□ 0.99
CLN3-251ENST00000636853 NEFLP07196 543 aa21.24■□□□□ 0.99
CLN3-251ENST00000636853 PIK3C2BO00750 1634 aa21.23■□□□□ 0.99
CLN3-251ENST00000636853 BCANQ96GW7 911 aa21.23■□□□□ 0.99
CLN3-251ENST00000636853 BRD4O60885 1362 aaPredicted RBP21.23■□□□□ 0.99
CLN3-251ENST00000636853 CDCA8Q53HL2 280 aa21.21■□□□□ 0.99
CLN3-251ENST00000636853 PIK3C2GO75747 1445 aa21.21■□□□□ 0.99
CLN3-251ENST00000636853 NUTM2DQ5VT03 806 aaPredicted RBP21.2■□□□□ 0.98
CLN3-251ENST00000636853 RPGRIP1LQ68CZ1 1315 aa21.2■□□□□ 0.98
CLN3-251ENST00000636853 IDI1Q13907 227 aa21.2■□□□□ 0.98
CLN3-251ENST00000636853 KIF13AQ9H1H9 1805 aa21.18■□□□□ 0.98
CLN3-251ENST00000636853 SENP3-EIF4A1A0A087X0R7 540 aa21.18■□□□□ 0.98
CLN3-251ENST00000636853 NLRP13Q86W25 1043 aa21.18■□□□□ 0.98
CLN3-251ENST00000636853 C14orf93Q9H972 538 aaKnown RBP21.18■□□□□ 0.98
CLN3-251ENST00000636853 SETBP1Q9Y6X0 1596 aa21.16■□□□□ 0.98
CLN3-251ENST00000636853 TMEM132EQ6IEE7 984 aa21.16■□□□□ 0.98
CLN3-251ENST00000636853 PREX1Q8TCU6 1659 aa21.16■□□□□ 0.98
CLN3-251ENST00000636853 TRAK1Q9UPV9 953 aa21.16■□□□□ 0.98
CLN3-251ENST00000636853 KDM5AP29375 1690 aaKnown RBP21.15■□□□□ 0.98
CLN3-251ENST00000636853 MYOM1P52179 1685 aa21.15■□□□□ 0.98
CLN3-251ENST00000636853 NEXMIFQ5QGS0 1516 aa21.15■□□□□ 0.98
CLN3-251ENST00000636853 LRPPRCP42704 1394 aaKnown RBP21.15■□□□□ 0.98
CLN3-251ENST00000636853 ERVK-7P63135 1459 aa21.14■□□□□ 0.97
CLN3-251ENST00000636853 FBXO31Q5XUX0 539 aaPredicted RBP21.14■□□□□ 0.97
CLN3-251ENST00000636853 SLC52A1Q9NWF4 448 aa21.14■□□□□ 0.97
CLN3-251ENST00000636853 KNSTRNQ9Y448 316 aa21.13■□□□□ 0.97
CLN3-251ENST00000636853 MYO3AQ8NEV4 1616 aa21.12■□□□□ 0.97
CLN3-251ENST00000636853 ADGRB1O14514 1584 aa21.12■□□□□ 0.97
CLN3-251ENST00000636853 MYO5BQ9ULV0 1848 aa21.12■□□□□ 0.97
CLN3-251ENST00000636853 VGFO15240 615 aaPredicted RBP21.12■□□□□ 0.97
CLN3-251ENST00000636853 REREQ9P2R6 1566 aa21.12■□□□□ 0.97
CLN3-251ENST00000636853 CENPJQ9HC77 1338 aaPredicted RBP21.11■□□□□ 0.97
CLN3-251ENST00000636853 SLC24A1O60721 1099 aa21.11■□□□□ 0.97
CLN3-251ENST00000636853 SENP3Q9H4L4 574 aaPredicted RBP21.1■□□□□ 0.97
CLN3-251ENST00000636853 AGLP35573 1532 aa21.1■□□□□ 0.97
CLN3-251ENST00000636853 MLECQ14165 292 aa21.09■□□□□ 0.97
CLN3-251ENST00000636853 IRX6P78412 446 aaPredicted RBP21.09■□□□□ 0.97
CLN3-251ENST00000636853 AMER1Q5JTC6 1135 aaPredicted RBP21.09■□□□□ 0.97
CLN3-251ENST00000636853 TMEM131LA2VDJ0 1609 aa21.08■□□□□ 0.97
CLN3-251ENST00000636853 SBNO2Q9Y2G9 1366 aa21.07■□□□□ 0.96
CLN3-251ENST00000636853 CLTCQ00610 1675 aaKnown RBP21.07■□□□□ 0.96
CLN3-251ENST00000636853 QRICH2Q9H0J4 1663 aa21.06■□□□□ 0.96
CLN3-251ENST00000636853 ASXL1Q8IXJ9 1541 aa21.05■□□□□ 0.96
CLN3-251ENST00000636853 PPP6R1Q9UPN7 881 aa21.04■□□□□ 0.96
CLN3-251ENST00000636853 ARHGEF40Q8TER5 1519 aa21.03■□□□□ 0.96
CLN3-251ENST00000636853 SMG6Q86US8 1419 aaKnown RBP21.03■□□□□ 0.96
CLN3-251ENST00000636853 ZFYVE9O95405 1425 aa21.02■□□□□ 0.96
CLN3-251ENST00000636853 PPP2R1AP30153 589 aa21.02■□□□□ 0.95
CLN3-251ENST00000636853 CARD14Q9BXL6 1004 aa21.01■□□□□ 0.95
CLN3-251ENST00000636853 STAG3Q9UJ98 1225 aa21.01■□□□□ 0.95
CLN3-251ENST00000636853 NUDCQ9Y266 331 aa21.01■□□□□ 0.95
CLN3-251ENST00000636853 SALL2Q9Y467 1007 aaPredicted RBP20.99■□□□□ 0.95
CLN3-251ENST00000636853 ARHGEF28Q8N1W1 1705 aaKnown RBP20.99■□□□□ 0.95
CLN3-251ENST00000636853 NPC1L1Q9UHC9 1359 aa20.98■□□□□ 0.95
CLN3-251ENST00000636853 STK26Q9P289 416 aa20.98■□□□□ 0.95
CLN3-251ENST00000636853 SAFB2Q14151 953 aaKnown RBP eCLIP20.95■□□□□ 0.95
CLN3-251ENST00000636853 SLC12A5Q9H2X9 1139 aa20.95■□□□□ 0.95
CLN3-251ENST00000636853 SPATA31D1Q6ZQQ2 1576 aa20.95■□□□□ 0.94
CLN3-251ENST00000636853 ESF1Q9H501 851 aaKnown RBP20.93■□□□□ 0.94
CLN3-251ENST00000636853 BLMP54132 1417 aaPredicted RBP20.93■□□□□ 0.94
CLN3-251ENST00000636853 ADAMTS8Q9UP79 889 aa20.92■□□□□ 0.94
CLN3-251ENST00000636853 TULP4Q9NRJ4 1543 aa20.92■□□□□ 0.94
CLN3-251ENST00000636853 EVC2Q86UK5 1308 aa20.91■□□□□ 0.94
CLN3-251ENST00000636853 A2ML1A8K2U0 1454 aa20.91■□□□□ 0.94
CLN3-251ENST00000636853 ZMYM3Q14202 1370 aa20.9■□□□□ 0.94
CLN3-251ENST00000636853 INSRP06213 1382 aa20.9■□□□□ 0.94
CLN3-251ENST00000636853 NSD3Q9BZ95 1437 aa20.9■□□□□ 0.94
CLN3-251ENST00000636853 ALKQ9UM73 1620 aa20.89■□□□□ 0.93
CLN3-251ENST00000636853 WDR43Q15061 677 aaKnown RBP eCLIP20.89■□□□□ 0.93
CLN3-251ENST00000636853 CABP2Q9NPB3 220 aa20.89■□□□□ 0.93
CLN3-251ENST00000636853 YTHDC2Q9H6S0 1430 aaKnown RBP20.88■□□□□ 0.93
CLN3-251ENST00000636853 PTPRMP28827 1452 aa20.87■□□□□ 0.93
CLN3-251ENST00000636853 ERICH6BQ5W0A0 696 aa20.87■□□□□ 0.93
CLN3-251ENST00000636853 PRAM1Q96QH2 718 aa20.87■□□□□ 0.93
CLN3-251ENST00000636853 RIMS2Q9UQ26 1411 aa20.87■□□□□ 0.93
CLN3-251ENST00000636853 TSHZ2Q9NRE2 1034 aa20.86■□□□□ 0.93
CLN3-251ENST00000636853 PUS7Q96PZ0 661 aaKnown RBP20.85■□□□□ 0.93
CLN3-251ENST00000636853 CDCA7LQ96GN5 454 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms