RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RPRD2Q5VT52 1461 aaKnown RBP24.83■■□□□ 1.56
CLN3-246ENST00000636228 PPP1R15AO75807 674 aaPredicted RBP24.81■■□□□ 1.56
CLN3-246ENST00000636228 NUTM2DQ5VT03 806 aaPredicted RBP24.81■■□□□ 1.56
CLN3-246ENST00000636228 XIRP1Q702N8 1843 aaKnown RBP24.8■■□□□ 1.56
CLN3-246ENST00000636228 ZFYVE9O95405 1425 aa24.78■■□□□ 1.56
CLN3-246ENST00000636228 RIMS2Q9UQ26 1411 aa24.78■■□□□ 1.56
CLN3-246ENST00000636228 ROCK1Q13464 1354 aa24.78■■□□□ 1.56
CLN3-246ENST00000636228 HDGFP51858 240 aaKnown RBP24.76■■□□□ 1.55
CLN3-246ENST00000636228 PLEKHG1Q9ULL1 1385 aa24.76■■□□□ 1.55
CLN3-246ENST00000636228 NUP155O75694 1391 aa24.75■■□□□ 1.55
CLN3-246ENST00000636228 FAM135BQ49AJ0 1406 aa24.75■■□□□ 1.55
CLN3-246ENST00000636228 UNC13BO14795 1591 aa24.74■■□□□ 1.55
CLN3-246ENST00000636228 TMEM131LA2VDJ0 1609 aa24.72■■□□□ 1.55
CLN3-246ENST00000636228 GCC2Q8IWJ2 1684 aa24.7■■□□□ 1.54
CLN3-246ENST00000636228 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.7■■□□□ 1.54
CLN3-246ENST00000636228 TBX22Q9Y458 520 aa24.7■■□□□ 1.54
CLN3-246ENST00000636228 NKTRP30414 1462 aaKnown RBP24.69■■□□□ 1.54
CLN3-246ENST00000636228 E9PCH4 1651 aa24.69■■□□□ 1.54
CLN3-246ENST00000636228 MSH6P52701 1360 aa24.68■■□□□ 1.54
CLN3-246ENST00000636228 NWD1Q149M9 1564 aa24.68■■□□□ 1.54
CLN3-246ENST00000636228 RGS17Q9UGC6 210 aaPredicted RBP24.68■■□□□ 1.54
CLN3-246ENST00000636228 MYO5BQ9ULV0 1848 aa24.68■■□□□ 1.54
CLN3-246ENST00000636228 SLAIN2Q9P270 581 aa24.67■■□□□ 1.54
CLN3-246ENST00000636228 IQGAP3Q86VI3 1631 aa24.65■■□□□ 1.54
CLN3-246ENST00000636228 ADAMTS13Q76LX8 1427 aa24.64■■□□□ 1.54
CLN3-246ENST00000636228 ROBO1Q9Y6N7 1651 aa24.63■■□□□ 1.53
CLN3-246ENST00000636228 C14orf37Q86TY3 774 aa24.63■■□□□ 1.53
CLN3-246ENST00000636228 AMOTL2Q9Y2J4 779 aa24.58■■□□□ 1.53
CLN3-246ENST00000636228 CHD2O14647 1828 aaKnown RBP24.58■■□□□ 1.53
CLN3-246ENST00000636228 ZNF326Q5BKZ1 582 aaKnown RBP24.57■■□□□ 1.52
CLN3-246ENST00000636228 PTPRUQ92729 1446 aa24.55■■□□□ 1.52
CLN3-246ENST00000636228 POTEAQ6S8J7 498 aa24.55■■□□□ 1.52
CLN3-246ENST00000636228 C19orf44Q9H6X5 657 aa24.53■■□□□ 1.52
CLN3-246ENST00000636228 PIK3R4Q99570 1358 aa24.53■■□□□ 1.52
CLN3-246ENST00000636228 NCOA3Q9Y6Q9 1424 aa24.52■■□□□ 1.52
CLN3-246ENST00000636228 ATF3P18847 181 aa24.51■■□□□ 1.51
CLN3-246ENST00000636228 CADPS2Q86UW7 1296 aa24.5■■□□□ 1.51
CLN3-246ENST00000636228 RRBP1Q9P2E9 1410 aaKnown RBP24.49■■□□□ 1.51
CLN3-246ENST00000636228 DIP2AQ14689 1571 aa24.49■■□□□ 1.51
CLN3-246ENST00000636228 NAIPQ13075 1403 aa24.48■■□□□ 1.51
CLN3-246ENST00000636228 JCADQ9P266 1359 aa24.48■■□□□ 1.51
CLN3-246ENST00000636228 TRPM2O94759 1503 aa24.47■■□□□ 1.51
CLN3-246ENST00000636228 PHLPP1O60346 1717 aa24.47■■□□□ 1.51
CLN3-246ENST00000636228 METP08581 1390 aa24.46■■□□□ 1.51
CLN3-246ENST00000636228 TRIM52Q96A61 297 aa24.46■■□□□ 1.51
CLN3-246ENST00000636228 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.44■■□□□ 1.5
CLN3-246ENST00000636228 SPHKAPQ2M3C7 1700 aa24.43■■□□□ 1.5
CLN3-246ENST00000636228 BRINP3Q76B58 766 aa24.42■■□□□ 1.5
CLN3-246ENST00000636228 NRXN3Q9Y4C0 1643 aa24.42■■□□□ 1.5
CLN3-246ENST00000636228 CLTCL1P53675 1640 aa24.4■■□□□ 1.5
CLN3-246ENST00000636228 SETBP1Q9Y6X0 1596 aa24.4■■□□□ 1.5
CLN3-246ENST00000636228 COL16A1Q07092 1604 aaPredicted RBP24.39■■□□□ 1.5
CLN3-246ENST00000636228 MEX3CQ5U5Q3 659 aaKnown RBP24.37■■□□□ 1.49
CLN3-246ENST00000636228 NEXMIFQ5QGS0 1516 aa24.36■■□□□ 1.49
CLN3-246ENST00000636228 SLC4A1APQ9BWU0 796 aaKnown RBP24.36■■□□□ 1.49
CLN3-246ENST00000636228 LRP6O75581 1613 aa24.35■■□□□ 1.49
CLN3-246ENST00000636228 SPATA31A6Q5VVP1 1343 aa24.35■■□□□ 1.49
CLN3-246ENST00000636228 FOXD1Q16676 465 aa24.34■■□□□ 1.49
CLN3-246ENST00000636228 DDX17Q92841 729 aaKnown RBP24.34■■□□□ 1.49
CLN3-246ENST00000636228 XRN1Q8IZH2 1706 aaKnown RBP24.34■■□□□ 1.49
CLN3-246ENST00000636228 HFM1A2PYH4 1435 aa24.34■■□□□ 1.49
CLN3-246ENST00000636228 AHDC1Q5TGY3 1603 aaPredicted RBP24.33■■□□□ 1.49
CLN3-246ENST00000636228 NUTM2BA6NNL0 878 aaPredicted RBP24.33■■□□□ 1.49
CLN3-246ENST00000636228 NUTM2EB1AL46 878 aaPredicted RBP24.33■■□□□ 1.49
CLN3-246ENST00000636228 NUTM2AQ8IVF1 878 aaPredicted RBP24.33■■□□□ 1.49
CLN3-246ENST00000636228 MST1RQ04912 1400 aa24.32■■□□□ 1.48
CLN3-246ENST00000636228 DCCP43146 1447 aa24.31■■□□□ 1.48
CLN3-246ENST00000636228 VGFO15240 615 aaPredicted RBP24.3■■□□□ 1.48
CLN3-246ENST00000636228 ASXL1Q8IXJ9 1541 aa24.28■■□□□ 1.48
CLN3-246ENST00000636228 ADGRL3Q9HAR2 1447 aa24.27■■□□□ 1.48
CLN3-246ENST00000636228 ZNF772Q68DY9 489 aaPredicted RBP24.25■■□□□ 1.47
CLN3-246ENST00000636228 ROBO2Q9HCK4 1378 aa24.25■■□□□ 1.47
CLN3-246ENST00000636228 RPGRIP1LQ68CZ1 1315 aa24.24■■□□□ 1.47
CLN3-246ENST00000636228 LRRC59Q96AG4 307 aaKnown RBP24.23■■□□□ 1.47
CLN3-246ENST00000636228 KIF1BO60333 1816 aa24.23■■□□□ 1.47
CLN3-246ENST00000636228 SETD5Q9C0A6 1442 aa24.22■■□□□ 1.47
CLN3-246ENST00000636228 SHPRHQ149N8 1683 aa24.21■■□□□ 1.47
CLN3-246ENST00000636228 RGL3Q3MIN7 710 aa24.21■■□□□ 1.47
CLN3-246ENST00000636228 ORAI2Q96SN7 254 aa24.21■■□□□ 1.47
CLN3-246ENST00000636228 C1orf167Q5SNV9 1468 aa24.19■■□□□ 1.46
CLN3-246ENST00000636228 SETD1AO15047 1707 aaKnown RBP24.18■■□□□ 1.46
CLN3-246ENST00000636228 NALCNQ8IZF0 1738 aa24.18■■□□□ 1.46
CLN3-246ENST00000636228 PTCH1Q13635 1447 aa24.18■■□□□ 1.46
CLN3-246ENST00000636228 AFF2P51816 1311 aa24.17■■□□□ 1.46
CLN3-246ENST00000636228 ADGRF5Q8IZF2 1346 aa24.17■■□□□ 1.46
CLN3-246ENST00000636228 MPHOSPH9Q99550 1183 aa24.17■■□□□ 1.46
CLN3-246ENST00000636228 RXRBP28702 533 aa24.16■■□□□ 1.46
CLN3-246ENST00000636228 C8orf37Q96NL8 207 aa24.16■■□□□ 1.46
CLN3-246ENST00000636228 PNPLA6Q8IY17 1366 aa24.16■■□□□ 1.46
CLN3-246ENST00000636228 NHSL1Q5SYE7 1610 aa24.14■■□□□ 1.46
CLN3-246ENST00000636228 STK26Q9P289 416 aa24.14■■□□□ 1.45
CLN3-246ENST00000636228 CCDC144AA2RUR9 1427 aa24.12■■□□□ 1.45
CLN3-246ENST00000636228 ADAMTS2O95450 1211 aa24.12■■□□□ 1.45
CLN3-246ENST00000636228 TMEM132EQ6IEE7 984 aa24.1■■□□□ 1.45
CLN3-246ENST00000636228 WAPLQ7Z5K2 1190 aa24.1■■□□□ 1.45
CLN3-246ENST00000636228 UPF1Q92900 1129 aaKnown RBP eCLIP24.09■■□□□ 1.45
CLN3-246ENST00000636228 SOS2Q07890 1332 aaPredicted RBP24.09■■□□□ 1.45
CLN3-246ENST00000636228 PPLO60437 1756 aa24.08■■□□□ 1.45
CLN3-246ENST00000636228 QTRT2Q9H974 415 aaKnown RBP24.08■■□□□ 1.45
CLN3-246ENST00000636228 SPATA31E1Q6ZUB1 1445 aa24.08■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms