RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 E9PSI1 815 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 WDHD1O75717 1129 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-212ENST00000636194 CPLX1O14810 134 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 RGL3Q3MIN7 710 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 HOMER2Q9NSB8 354 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 APBB1O00213 710 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 EIF3JO75822 258 aaKnown RBP7.26□□□□□ -1.25
SCN1A-212ENST00000636194 SKOR2Q2VWA4 1001 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-212ENST00000636194 SOX12O15370 315 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 MORC1Q86VD1 984 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 TMEM87AQ8NBN3 555 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 CCP110O43303 1012 aa7.25□□□□□ -1.25
SCN1A-212ENST00000636194 MCTP1Q6DN14 999 aa7.25□□□□□ -1.25
SCN1A-212ENST00000636194 ITPRIPQ8IWB1 547 aa7.25□□□□□ -1.25
SCN1A-212ENST00000636194 GTPBP4Q9BZE4 634 aaKnown RBP7.25□□□□□ -1.25
SCN1A-212ENST00000636194 HMGB2P26583 209 aaKnown RBP7.25□□□□□ -1.25
SCN1A-212ENST00000636194 RUFY2Q8WXA3 655 aa7.25□□□□□ -1.25
SCN1A-212ENST00000636194 GZF1Q9H116 711 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-212ENST00000636194 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.25□□□□□ -1.25
SCN1A-212ENST00000636194 KIAA0754O94854 1291 aa7.25□□□□□ -1.25
SCN1A-212ENST00000636194 ZNF592Q92610 1267 aa7.25□□□□□ -1.25
SCN1A-212ENST00000636194 ANKRD18BA2A2Z9 1011 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 SPDYE4A6NLX3 237 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 DHX8Q14562 1220 aaKnown RBP7.24□□□□□ -1.25
SCN1A-212ENST00000636194 RBM33Q96EV2 1170 aaKnown RBP7.24□□□□□ -1.25
SCN1A-212ENST00000636194 RSPH6AQ9H0K4 717 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 USP8P40818 1118 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 IQCEQ6IPM2 695 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 OLFM4Q6UX06 510 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 GIGYF2Q6Y7W6 1299 aaKnown RBP7.24□□□□□ -1.25
SCN1A-212ENST00000636194 CCDC66A2RUB6 948 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 RNF20Q5VTR2 975 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 SMARCE1Q969G3 411 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 SLC26A8Q96RN1 970 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 TXLNAP40222 546 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 MTERF4Q7Z6M4 381 aaKnown RBP7.24□□□□□ -1.25
SCN1A-212ENST00000636194 GIMAP7Q8NHV1 300 aa7.24□□□□□ -1.25
SCN1A-212ENST00000636194 BBXQ8WY36 941 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-212ENST00000636194 LEKR1Q6ZMV7 388 aa7.23□□□□□ -1.25
SCN1A-212ENST00000636194 PHF23Q9BUL5 403 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-212ENST00000636194 ZKSCAN1P17029 563 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-212ENST00000636194 PIP4K2AP48426 406 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-212ENST00000636194 EVA1CP58658 441 aa7.23□□□□□ -1.25
SCN1A-212ENST00000636194 EID1Q9Y6B2 187 aa7.23□□□□□ -1.25
SCN1A-212ENST00000636194 GOLGA4Q13439 2230 aaKnown RBP7.23□□□□□ -1.25
SCN1A-212ENST00000636194 TAF3Q5VWG9 929 aa7.23□□□□□ -1.25
SCN1A-212ENST00000636194 SLC3A2P08195 630 aaKnown RBP7.23□□□□□ -1.25
SCN1A-212ENST00000636194 FBXW7Q969H0 707 aa7.23□□□□□ -1.25
SCN1A-212ENST00000636194 PABPN1LA6NDY0 278 aaKnown RBP7.23□□□□□ -1.25
SCN1A-212ENST00000636194 CCDC146Q8IYE0 955 aa7.23□□□□□ -1.25
SCN1A-212ENST00000636194 RBM19Q9Y4C8 960 aaKnown RBP7.23□□□□□ -1.25
SCN1A-212ENST00000636194 CGNL1Q0VF96 1302 aa7.22□□□□□ -1.25
SCN1A-212ENST00000636194 ABCC9O60706 1549 aa7.22□□□□□ -1.25
SCN1A-212ENST00000636194 CDK5RAP3Q96JB5 506 aa7.22□□□□□ -1.25
SCN1A-212ENST00000636194 SEPT6Q14141 434 aa7.22□□□□□ -1.25
SCN1A-212ENST00000636194 ANAPC15P60006 121 aa7.22□□□□□ -1.25
SCN1A-212ENST00000636194 IKQ13123 557 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-212ENST00000636194 NFXL1Q6ZNB6 911 aa7.22□□□□□ -1.25
SCN1A-212ENST00000636194 FAM161AQ3B820 660 aa7.21□□□□□ -1.25
SCN1A-212ENST00000636194 MAGEC2Q9UBF1 373 aaPredicted RBP7.21□□□□□ -1.25
SCN1A-212ENST00000636194 SKIDA1Q1XH10 827 aa7.21□□□□□ -1.25
SCN1A-212ENST00000636194 ERCC6Q03468 1493 aa7.21□□□□□ -1.26
SCN1A-212ENST00000636194 CT47B1P0C2W7 299 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-212ENST00000636194 POTEJP0CG39 1038 aa7.21□□□□□ -1.26
SCN1A-212ENST00000636194 GOLGA6L10A0A0M3HER8 536 aa7.21□□□□□ -1.26
SCN1A-212ENST00000636194 CFDP1Q9UEE9 299 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-212ENST00000636194 C1orf141Q5JVX7 400 aa7.21□□□□□ -1.26
SCN1A-212ENST00000636194 AXDND1Q5T1B0 1012 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-212ENST00000636194 KTN1Q86UP2 1357 aaKnown RBP7.2□□□□□ -1.26
SCN1A-212ENST00000636194 HMGB3O15347 200 aaKnown RBP7.2□□□□□ -1.26
SCN1A-212ENST00000636194 ROCK1Q13464 1354 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.2□□□□□ -1.26
SCN1A-212ENST00000636194 V9GYY5 206 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-212ENST00000636194 CC2D1BQ5T0F9 858 aaKnown RBP7.2□□□□□ -1.26
SCN1A-212ENST00000636194 DRC1Q96MC2 740 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 SART3Q15020 963 aaKnown RBP7.2□□□□□ -1.26
SCN1A-212ENST00000636194 TERF2IPQ9NYB0 399 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 SASS6Q6UVJ0 657 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 TTC5Q8N0Z6 440 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 TCHPQ9BT92 498 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 KIF7Q2M1P5 1343 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 KLHL34Q8N239 644 aa7.2□□□□□ -1.26
SCN1A-212ENST00000636194 REC8O95072 547 aa7.19□□□□□ -1.26
SCN1A-212ENST00000636194 SLU7O95391 586 aaKnown RBP7.19□□□□□ -1.26
SCN1A-212ENST00000636194 CETN2P41208 172 aa7.19□□□□□ -1.26
SCN1A-212ENST00000636194 CENPQQ7L2Z9 268 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-212ENST00000636194 SSX2IPQ9Y2D8 614 aa7.19□□□□□ -1.26
SCN1A-212ENST00000636194 STIM1Q13586 685 aa7.19□□□□□ -1.26
SCN1A-212ENST00000636194 BMS1Q14692 1282 aaKnown RBP7.19□□□□□ -1.26
SCN1A-212ENST00000636194 DZIP1LQ8IYY4 767 aaKnown RBP7.19□□□□□ -1.26
SCN1A-212ENST00000636194 PUS7Q96PZ0 661 aaKnown RBP7.19□□□□□ -1.26
SCN1A-212ENST00000636194 ERLIN1O75477 346 aa7.18□□□□□ -1.26
SCN1A-212ENST00000636194 RSPH4AQ5TD94 716 aa7.18□□□□□ -1.26
SCN1A-212ENST00000636194 PHLDB1Q86UU1 1377 aa7.18□□□□□ -1.26
SCN1A-212ENST00000636194 FILIP1LQ4L180 1135 aa7.18□□□□□ -1.26
SCN1A-212ENST00000636194 SAMD1Q6SPF0 538 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-212ENST00000636194 ERC1Q8IUD2 1116 aa7.18□□□□□ -1.26
SCN1A-212ENST00000636194 EPB41L2O43491 1005 aaKnown RBP7.18□□□□□ -1.26
SCN1A-212ENST00000636194 SF3B2Q13435 895 aaKnown RBP7.18□□□□□ -1.26
SCN1A-212ENST00000636194 AMPHP49418 695 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms