RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 TRIM21P19474 475 aaKnown RBP6.75□□□□□ -1.33
SCN1A-209ENST00000635750 CCDC191Q8NCU4 936 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 COG3Q96JB2 828 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 HOMER1Q86YM7 354 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 CCDC27Q2M243 656 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 FOXD4L5Q5VV16 416 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-209ENST00000635750 FOXD4L4Q8WXT5 416 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-209ENST00000635750 PPP1R1BQ9UD71 204 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-209ENST00000635750 NUTM2FA1L443 756 aa6.74□□□□□ -1.33
SCN1A-209ENST00000635750 IFIT2P09913 472 aaKnown RBP6.74□□□□□ -1.33
SCN1A-209ENST00000635750 PPM1FP49593 454 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-209ENST00000635750 ARHGAP35Q9NRY4 1499 aa6.74□□□□□ -1.33
SCN1A-209ENST00000635750 SLC3A2P08195 630 aaKnown RBP6.74□□□□□ -1.33
SCN1A-209ENST00000635750 ATF3P18847 181 aa6.74□□□□□ -1.33
SCN1A-209ENST00000635750 FOXD4L1Q9NU39 408 aa6.74□□□□□ -1.33
SCN1A-209ENST00000635750 CENPJQ9HC77 1338 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-209ENST00000635750 DESP17661 470 aa6.74□□□□□ -1.33
SCN1A-209ENST00000635750 NOM1Q5C9Z4 860 aaKnown RBP6.74□□□□□ -1.33
SCN1A-209ENST00000635750 ZNF592Q92610 1267 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 UACAQ9BZF9 1416 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 WRNQ14191 1432 aaPredicted RBP eCLIP6.73□□□□□ -1.33
SCN1A-209ENST00000635750 PHLDB1Q86UU1 1377 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 DNAI2Q9GZS0 605 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 ANO2Q9NQ90 1003 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 ROCK1Q13464 1354 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 G3BP1Q13283 466 aaKnown RBP eCLIP6.73□□□□□ -1.33
SCN1A-209ENST00000635750 PKD2Q13563 968 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 SKOR2Q2VWA4 1001 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-209ENST00000635750 CDK5RAP3Q96JB5 506 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 CHMP5Q9NZZ3 219 aa6.73□□□□□ -1.33
SCN1A-209ENST00000635750 KIF3BO15066 747 aa6.72□□□□□ -1.33
SCN1A-209ENST00000635750 NEFHP12036 1026 aa6.72□□□□□ -1.33
SCN1A-209ENST00000635750 FYB1O15117 783 aa6.72□□□□□ -1.33
SCN1A-209ENST00000635750 SEPT7Q16181 437 aaKnown RBP6.72□□□□□ -1.33
SCN1A-209ENST00000635750 OLFM4Q6UX06 510 aa6.72□□□□□ -1.33
SCN1A-209ENST00000635750 RALYLQ86SE5 291 aaKnown RBP6.72□□□□□ -1.33
SCN1A-209ENST00000635750 EIF2S2P20042 333 aaKnown RBP6.72□□□□□ -1.33
SCN1A-209ENST00000635750 WDHD1O75717 1129 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-209ENST00000635750 DEKP35659 375 aaKnown RBP6.72□□□□□ -1.33
SCN1A-209ENST00000635750 ANKRD30AQ9BXX3 1397 aa6.72□□□□□ -1.33
SCN1A-209ENST00000635750 ANKRD45Q5TZF3 282 aa6.71□□□□□ -1.33
SCN1A-209ENST00000635750 ZNF771Q7L3S4 317 aaPredicted RBP6.71□□□□□ -1.33
SCN1A-209ENST00000635750 SIN3AQ96ST3 1273 aa6.71□□□□□ -1.33
SCN1A-209ENST00000635750 HSP90AB4PQ58FF6 505 aa6.71□□□□□ -1.33
SCN1A-209ENST00000635750 SASS6Q6UVJ0 657 aa6.71□□□□□ -1.33
SCN1A-209ENST00000635750 NEBLO76041 1014 aa6.71□□□□□ -1.34
SCN1A-209ENST00000635750 ERLIN2O94905 339 aa6.71□□□□□ -1.34
SCN1A-209ENST00000635750 REC8O95072 547 aa6.71□□□□□ -1.34
SCN1A-209ENST00000635750 BICD2Q8TD16 824 aa6.71□□□□□ -1.34
SCN1A-209ENST00000635750 HMGB2P26583 209 aaKnown RBP6.71□□□□□ -1.34
SCN1A-209ENST00000635750 SART3Q15020 963 aaKnown RBP6.71□□□□□ -1.34
SCN1A-209ENST00000635750 CAGE1Q8TC20 777 aa6.71□□□□□ -1.34
SCN1A-209ENST00000635750 NAT10Q9H0A0 1025 aaKnown RBP6.71□□□□□ -1.34
SCN1A-209ENST00000635750 SLC4A3P48751 1232 aa6.71□□□□□ -1.34
SCN1A-209ENST00000635750 HSP90B2PQ58FF3 399 aa6.71□□□□□ -1.34
SCN1A-209ENST00000635750 ARGLU1Q9NWB6 273 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-209ENST00000635750 NUP155O75694 1391 aa6.7□□□□□ -1.34
SCN1A-209ENST00000635750 TXLNAP40222 546 aa6.7□□□□□ -1.34
SCN1A-209ENST00000635750 TMEM87AQ8NBN3 555 aa6.7□□□□□ -1.34
SCN1A-209ENST00000635750 SPDYE4A6NLX3 237 aa6.7□□□□□ -1.34
SCN1A-209ENST00000635750 KIF6Q6ZMV9 814 aa6.7□□□□□ -1.34
SCN1A-209ENST00000635750 MAGEC2Q9UBF1 373 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-209ENST00000635750 MPHOSPH10O00566 681 aaKnown RBP6.7□□□□□ -1.34
SCN1A-209ENST00000635750 NUTM2DQ5VT03 806 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-209ENST00000635750 ERCC4Q92889 916 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-209ENST00000635750 TIMELESSQ9UNS1 1208 aa6.7□□□□□ -1.34
SCN1A-209ENST00000635750 CGNL1Q0VF96 1302 aa6.7□□□□□ -1.34
SCN1A-209ENST00000635750 CCER2I3L3R5 266 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 ERC2O15083 957 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 FOXD4L6Q3SYB3 417 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-209ENST00000635750 FOXD4L3Q6VB84 417 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-209ENST00000635750 CLUAP1Q96AJ1 413 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-209ENST00000635750 DDX49Q9Y6V7 483 aaKnown RBP6.69□□□□□ -1.34
SCN1A-209ENST00000635750 KRT18P05783 430 aaKnown RBP6.69□□□□□ -1.34
SCN1A-209ENST00000635750 CCDC146Q8IYE0 955 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 RAPGEF4Q8WZA2 1011 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 EVC2Q86UK5 1308 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 ANKRD62A6NC57 917 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 EZRP15311 586 aaKnown RBP6.69□□□□□ -1.34
SCN1A-209ENST00000635750 TBC1D2BQ9UPU7 963 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 RSPH4AQ5TD94 716 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 PDCL3Q9H2J4 239 aa6.69□□□□□ -1.34
SCN1A-209ENST00000635750 RIC3Q7Z5B4 369 aa6.68□□□□□ -1.34
SCN1A-209ENST00000635750 CCDC73Q6ZRK6 1079 aa6.68□□□□□ -1.34
SCN1A-209ENST00000635750 SMARCE1Q969G3 411 aa6.68□□□□□ -1.34
SCN1A-209ENST00000635750 GBP2P32456 591 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-209ENST00000635750 WASHC4Q2M389 1173 aa6.68□□□□□ -1.34
SCN1A-209ENST00000635750 MNS1Q8NEH6 495 aa6.68□□□□□ -1.34
SCN1A-209ENST00000635750 MTMR7Q9Y216 660 aa6.68□□□□□ -1.34
SCN1A-209ENST00000635750 LUC7LQ9NQ29 371 aaKnown RBP6.68□□□□□ -1.34
SCN1A-209ENST00000635750 GNL3LQ9NVN8 582 aaKnown RBP6.68□□□□□ -1.34
SCN1A-209ENST00000635750 NINLQ9Y2I6 1382 aa6.68□□□□□ -1.34
SCN1A-209ENST00000635750 HSPA5P11021 654 aaKnown RBP6.67□□□□□ -1.34
SCN1A-209ENST00000635750 MATR3P43243 847 aaKnown RBP eCLIP6.67□□□□□ -1.341e-10■■■■■ 37.8
SCN1A-209ENST00000635750 FILIP1LQ4L180 1135 aa6.67□□□□□ -1.34
SCN1A-209ENST00000635750 PLIN1O60240 522 aa6.67□□□□□ -1.34
SCN1A-209ENST00000635750 TXLNBQ8N3L3 684 aa6.67□□□□□ -1.34
SCN1A-209ENST00000635750 VGFO15240 615 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-209ENST00000635750 SETD5Q9C0A6 1442 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms