RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 LRRC7Q96NW7 1537 aa26.79■■□□□ 1.88
CLN3-239ENST00000628023 KDM5AP29375 1690 aaKnown RBP26.77■■□□□ 1.88
CLN3-239ENST00000628023 STRCP1A6NGW2 1772 aa26.76■■□□□ 1.87
CLN3-239ENST00000628023 SOCS7O14512 581 aa26.75■■□□□ 1.87
CLN3-239ENST00000628023 MPHOSPH9Q99550 1183 aa26.75■■□□□ 1.87
CLN3-239ENST00000628023 SPHKAPQ2M3C7 1700 aa26.75■■□□□ 1.87
CLN3-239ENST00000628023 HRCP23327 699 aa26.74■■□□□ 1.87
CLN3-239ENST00000628023 HDGFP51858 240 aaKnown RBP26.69■■□□□ 1.86
CLN3-239ENST00000628023 FOXD1Q16676 465 aa26.69■■□□□ 1.86
CLN3-239ENST00000628023 BCANQ96GW7 911 aa26.69■■□□□ 1.86
CLN3-239ENST00000628023 ADGRB3O60242 1522 aa26.68■■□□□ 1.86
CLN3-239ENST00000628023 TRPM2O94759 1503 aa26.68■■□□□ 1.86
CLN3-239ENST00000628023 CHGAP10645 457 aaKnown RBP26.67■■□□□ 1.86
CLN3-239ENST00000628023 SLC26A8Q96RN1 970 aa26.66■■□□□ 1.86
CLN3-239ENST00000628023 ALKQ9UM73 1620 aa26.65■■□□□ 1.86
CLN3-239ENST00000628023 KCNA6P17658 529 aa26.65■■□□□ 1.86
CLN3-239ENST00000628023 PPP1R15AO75807 674 aaPredicted RBP26.62■■□□□ 1.85
CLN3-239ENST00000628023 SENP3Q9H4L4 574 aaPredicted RBP26.62■■□□□ 1.85
CLN3-239ENST00000628023 CLTCL1P53675 1640 aa26.61■■□□□ 1.85
CLN3-239ENST00000628023 PROSER2Q86WR7 435 aaPredicted RBP26.61■■□□□ 1.85
CLN3-239ENST00000628023 MED1Q15648 1581 aaPredicted RBP26.59■■□□□ 1.85
CLN3-239ENST00000628023 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.58■■□□□ 1.85
CLN3-239ENST00000628023 TMEM94Q12767 1356 aa26.58■■□□□ 1.84
CLN3-239ENST00000628023 TMEM131LA2VDJ0 1609 aa26.57■■□□□ 1.84
CLN3-239ENST00000628023 CCDC144AA2RUR9 1427 aa26.57■■□□□ 1.84
CLN3-239ENST00000628023 PHF23Q9BUL5 403 aaPredicted RBP26.56■■□□□ 1.84
CLN3-239ENST00000628023 RIMS2Q9UQ26 1411 aa26.56■■□□□ 1.84
CLN3-239ENST00000628023 MYO5BQ9ULV0 1848 aa26.55■■□□□ 1.84
CLN3-239ENST00000628023 XIRP1Q702N8 1843 aaKnown RBP26.55■■□□□ 1.84
CLN3-239ENST00000628023 PLEKHG1Q9ULL1 1385 aa26.55■■□□□ 1.84
CLN3-239ENST00000628023 PCGF6Q9BYE7 350 aa26.54■■□□□ 1.84
CLN3-239ENST00000628023 ZFYVE9O95405 1425 aa26.53■■□□□ 1.84
CLN3-239ENST00000628023 KIF1BO60333 1816 aa26.53■■□□□ 1.84
CLN3-239ENST00000628023 ZNF326Q5BKZ1 582 aaKnown RBP26.52■■□□□ 1.84
CLN3-239ENST00000628023 NKTRP30414 1462 aaKnown RBP26.51■■□□□ 1.83
CLN3-239ENST00000628023 FAM135BQ49AJ0 1406 aa26.5■■□□□ 1.83
CLN3-239ENST00000628023 RBM33Q96EV2 1170 aaKnown RBP26.48■■□□□ 1.83
CLN3-239ENST00000628023 TBX22Q9Y458 520 aa26.48■■□□□ 1.83
CLN3-239ENST00000628023 MSH6P52701 1360 aa26.47■■□□□ 1.83
CLN3-239ENST00000628023 NWD1Q149M9 1564 aa26.46■■□□□ 1.83
CLN3-239ENST00000628023 ANKRD30BQ9BXX2 1392 aa26.46■■□□□ 1.83
CLN3-239ENST00000628023 NUTM2DQ5VT03 806 aaPredicted RBP26.43■■□□□ 1.82
CLN3-239ENST00000628023 CHD2O14647 1828 aaKnown RBP26.42■■□□□ 1.82
CLN3-239ENST00000628023 RGL3Q3MIN7 710 aa26.39■■□□□ 1.82
CLN3-239ENST00000628023 C14orf37Q86TY3 774 aa26.39■■□□□ 1.82
CLN3-239ENST00000628023 SLAIN2Q9P270 581 aa26.39■■□□□ 1.82
CLN3-239ENST00000628023 DHX57Q6P158 1386 aaKnown RBP26.38■■□□□ 1.81
CLN3-239ENST00000628023 PIK3R4Q99570 1358 aa26.37■■□□□ 1.81
CLN3-239ENST00000628023 NEXMIFQ5QGS0 1516 aa26.37■■□□□ 1.81
CLN3-239ENST00000628023 SPATA31E1Q6ZUB1 1445 aa26.37■■□□□ 1.81
CLN3-239ENST00000628023 NCOA3Q9Y6Q9 1424 aa26.37■■□□□ 1.81
CLN3-239ENST00000628023 DIP2AQ14689 1571 aa26.37■■□□□ 1.81
CLN3-239ENST00000628023 ROBO1Q9Y6N7 1651 aa26.36■■□□□ 1.81
CLN3-239ENST00000628023 RPGRIP1LQ68CZ1 1315 aa26.36■■□□□ 1.81
CLN3-239ENST00000628023 ADAMTS13Q76LX8 1427 aa26.34■■□□□ 1.81
CLN3-239ENST00000628023 VGFO15240 615 aaPredicted RBP26.3■■□□□ 1.8
CLN3-239ENST00000628023 C19orf44Q9H6X5 657 aa26.3■■□□□ 1.8
CLN3-239ENST00000628023 PPLO60437 1756 aa26.3■■□□□ 1.8
CLN3-239ENST00000628023 ATF3P18847 181 aa26.29■■□□□ 1.8
CLN3-239ENST00000628023 CADPS2Q86UW7 1296 aa26.29■■□□□ 1.8
CLN3-239ENST00000628023 AMOTL2Q9Y2J4 779 aa26.29■■□□□ 1.8
CLN3-239ENST00000628023 SETBP1Q9Y6X0 1596 aa26.24■■□□□ 1.79
CLN3-239ENST00000628023 IFT172Q9UG01 1749 aa26.23■■□□□ 1.79
CLN3-239ENST00000628023 PHLPP1O60346 1717 aa26.22■■□□□ 1.79
CLN3-239ENST00000628023 JCADQ9P266 1359 aa26.21■■□□□ 1.79
CLN3-239ENST00000628023 RGS17Q9UGC6 210 aaPredicted RBP26.21■■□□□ 1.79
CLN3-239ENST00000628023 NEUROD1Q13562 356 aa26.2■■□□□ 1.78
CLN3-239ENST00000628023 NRXN3Q9Y4C0 1643 aa26.2■■□□□ 1.78
CLN3-239ENST00000628023 PTPRUQ92729 1446 aa26.2■■□□□ 1.78
CLN3-239ENST00000628023 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.19■■□□□ 1.78
CLN3-239ENST00000628023 ADGRF5Q8IZF2 1346 aa26.19■■□□□ 1.78
CLN3-239ENST00000628023 SIN3AQ96ST3 1273 aa26.19■■□□□ 1.78
CLN3-239ENST00000628023 MYOM2P54296 1465 aa26.17■■□□□ 1.78
CLN3-239ENST00000628023 DCAF11Q8TEB1 546 aa26.17■■□□□ 1.78
CLN3-239ENST00000628023 KDM2AQ9Y2K7 1162 aa26.15■■□□□ 1.78
CLN3-239ENST00000628023 PIK3C2GO75747 1445 aa26.14■■□□□ 1.77
CLN3-239ENST00000628023 DCCP43146 1447 aa26.14■■□□□ 1.77
CLN3-239ENST00000628023 METP08581 1390 aa26.13■■□□□ 1.77
CLN3-239ENST00000628023 XRN1Q8IZH2 1706 aaKnown RBP26.11■■□□□ 1.77
CLN3-239ENST00000628023 SPATA31A6Q5VVP1 1343 aa26.11■■□□□ 1.77
CLN3-239ENST00000628023 STAC3Q96MF2 364 aa26.1■■□□□ 1.77
CLN3-239ENST00000628023 NRXN1Q9ULB1 1477 aa26.1■■□□□ 1.77
CLN3-239ENST00000628023 COL16A1Q07092 1604 aaPredicted RBP26.1■■□□□ 1.77
CLN3-239ENST00000628023 POTEAQ6S8J7 498 aa26.09■■□□□ 1.77
CLN3-239ENST00000628023 BRINP3Q76B58 766 aa26.09■■□□□ 1.77
CLN3-239ENST00000628023 MEX3CQ5U5Q3 659 aaKnown RBP26.08■■□□□ 1.77
CLN3-239ENST00000628023 AHDC1Q5TGY3 1603 aaPredicted RBP26.07■■□□□ 1.76
CLN3-239ENST00000628023 CCER1Q8TC90 406 aaPredicted RBP26.07■■□□□ 1.76
CLN3-239ENST00000628023 SETD1AO15047 1707 aaKnown RBP26.07■■□□□ 1.76
CLN3-239ENST00000628023 TONSLQ96HA7 1378 aa26.06■■□□□ 1.76
CLN3-239ENST00000628023 LAMC1P11047 1609 aa26.05■■□□□ 1.76
CLN3-239ENST00000628023 L3MBTL2Q969R5 705 aa26.04■■□□□ 1.76
CLN3-239ENST00000628023 ADGRL3Q9HAR2 1447 aa26.03■■□□□ 1.76
CLN3-239ENST00000628023 CLSPNQ9HAW4 1339 aa26.02■■□□□ 1.76
CLN3-239ENST00000628023 MST1RQ04912 1400 aa26.01■■□□□ 1.75
CLN3-239ENST00000628023 CFAP70Q5T0N1 1121 aa26.01■■□□□ 1.75
CLN3-239ENST00000628023 C14orf93Q9H972 538 aaKnown RBP26.01■■□□□ 1.75
CLN3-239ENST00000628023 ASXL1Q8IXJ9 1541 aa25.99■■□□□ 1.75
CLN3-239ENST00000628023 ZNF772Q68DY9 489 aaPredicted RBP25.99■■□□□ 1.75
CLN3-239ENST00000628023 TMEM132EQ6IEE7 984 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms