RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 KTN1Q86UP2 1357 aaKnown RBP30.27■■■□□ 2.44
PNKP-220ENST00000627232 TMF1P82094 1093 aa30.27■■■□□ 2.44
PNKP-220ENST00000627232 SYNMO15061 1565 aa30.25■■■□□ 2.43
PNKP-220ENST00000627232 AGLP35573 1532 aa30.25■■■□□ 2.43
PNKP-220ENST00000627232 DISP3Q9P2K9 1392 aa30.25■■■□□ 2.43
PNKP-220ENST00000627232 RPGRIP1LQ68CZ1 1315 aa30.24■■■□□ 2.43
PNKP-220ENST00000627232 CCDC184Q52MB2 194 aa30.23■■■□□ 2.43
PNKP-220ENST00000627232 MRS2Q9HD23 443 aa30.23■■■□□ 2.43
PNKP-220ENST00000627232 EIF3AQ14152 1382 aaKnown RBP30.23■■■□□ 2.43
PNKP-220ENST00000627232 SETBP1Q9Y6X0 1596 aa30.21■■■□□ 2.43
PNKP-220ENST00000627232 ADGRF5Q8IZF2 1346 aa30.2■■■□□ 2.43
PNKP-220ENST00000627232 PREX1Q8TCU6 1659 aa30.18■■■□□ 2.42
PNKP-220ENST00000627232 PPP6R1Q9UPN7 881 aa30.17■■■□□ 2.42
PNKP-220ENST00000627232 RALBP1Q15311 655 aa30.16■■■□□ 2.42
PNKP-220ENST00000627232 MYO3AQ8NEV4 1616 aa30.14■■■□□ 2.42
PNKP-220ENST00000627232 SLC24A1O60721 1099 aa30.14■■■□□ 2.42
PNKP-220ENST00000627232 CHGAP10645 457 aaKnown RBP30.14■■■□□ 2.42
PNKP-220ENST00000627232 HNRNPUQ00839 825 aaKnown RBP eCLIP30.14■■■□□ 2.42
PNKP-220ENST00000627232 PIK3C2GO75747 1445 aa30.13■■■□□ 2.41
PNKP-220ENST00000627232 CDCA8Q53HL2 280 aa30.13■■■□□ 2.41
PNKP-220ENST00000627232 CFAP70Q5T0N1 1121 aa30.13■■■□□ 2.41
PNKP-220ENST00000627232 SLC52A1Q9NWF4 448 aa30.12■■■□□ 2.41
PNKP-220ENST00000627232 ARHGEF40Q8TER5 1519 aa30.11■■■□□ 2.41
PNKP-220ENST00000627232 NEXMIFQ5QGS0 1516 aa30.09■■■□□ 2.41
PNKP-220ENST00000627232 PER1O15534 1290 aaPredicted RBP30.09■■■□□ 2.41
PNKP-220ENST00000627232 MYBBP1AQ9BQG0 1328 aaKnown RBP30.07■■■□□ 2.4
PNKP-220ENST00000627232 FAM9BQ8IZU0 186 aa30.06■■■□□ 2.4
PNKP-220ENST00000627232 KDM5AP29375 1690 aaKnown RBP30.06■■■□□ 2.4
PNKP-220ENST00000627232 BRD4O60885 1362 aaPredicted RBP30.06■■■□□ 2.4
PNKP-220ENST00000627232 PARD3Q8TEW0 1356 aa30.06■■■□□ 2.4
PNKP-220ENST00000627232 C14orf93Q9H972 538 aaKnown RBP30.06■■■□□ 2.4
PNKP-220ENST00000627232 ZFYVE9O95405 1425 aa30.04■■■□□ 2.4
PNKP-220ENST00000627232 SBNO2Q9Y2G9 1366 aa30.03■■■□□ 2.4
PNKP-220ENST00000627232 TMEM131LA2VDJ0 1609 aa30.03■■■□□ 2.4
PNKP-220ENST00000627232 ADGRB1O14514 1584 aa30.03■■■□□ 2.4
PNKP-220ENST00000627232 ERVK-7P63135 1459 aa30.02■■■□□ 2.4
PNKP-220ENST00000627232 VGFO15240 615 aaPredicted RBP30.01■■■□□ 2.4
PNKP-220ENST00000627232 IDI1Q13907 227 aa30.01■■■□□ 2.4
PNKP-220ENST00000627232 PANK3Q9H999 370 aa30.01■■■□□ 2.4
PNKP-220ENST00000627232 MYOM1P52179 1685 aa30.01■■■□□ 2.4
PNKP-220ENST00000627232 CLTCQ00610 1675 aaKnown RBP30.01■■■□□ 2.4
PNKP-220ENST00000627232 MYO5BQ9ULV0 1848 aa30.01■■■□□ 2.39
PNKP-220ENST00000627232 ZBED9Q6R2W3 1325 aa29.98■■■□□ 2.39
PNKP-220ENST00000627232 TMC1Q8TDI8 760 aa29.97■■■□□ 2.39
PNKP-220ENST00000627232 CNGB1Q14028 1251 aaPredicted RBP29.96■■■□□ 2.39
PNKP-220ENST00000627232 SUPT16HQ9Y5B9 1047 aaKnown RBP29.96■■■□□ 2.39
PNKP-220ENST00000627232 PNISRQ8TF01 805 aaKnown RBP29.95■■■□□ 2.38
PNKP-220ENST00000627232 SPATA31D1Q6ZQQ2 1576 aa29.94■■■□□ 2.38
PNKP-220ENST00000627232 NLRP13Q86W25 1043 aa29.93■■■□□ 2.38
PNKP-220ENST00000627232 QRICH2Q9H0J4 1663 aa29.92■■■□□ 2.38
PNKP-220ENST00000627232 CENPJQ9HC77 1338 aaPredicted RBP29.91■■■□□ 2.38
PNKP-220ENST00000627232 LRPPRCP42704 1394 aaKnown RBP29.91■■■□□ 2.38
PNKP-220ENST00000627232 ARHGEF28Q8N1W1 1705 aaKnown RBP29.87■■■□□ 2.37
PNKP-220ENST00000627232 FBXO31Q5XUX0 539 aaPredicted RBP29.86■■■□□ 2.37
PNKP-220ENST00000627232 NPC1L1Q9UHC9 1359 aa29.86■■■□□ 2.37
PNKP-220ENST00000627232 KNSTRNQ9Y448 316 aa29.86■■■□□ 2.37
PNKP-220ENST00000627232 ASXL1Q8IXJ9 1541 aa29.85■■■□□ 2.37
PNKP-220ENST00000627232 NEFLP07196 543 aa29.83■■■□□ 2.37
PNKP-220ENST00000627232 CC2D1BQ5T0F9 858 aaKnown RBP29.82■■■□□ 2.36
PNKP-220ENST00000627232 TRAK1Q9UPV9 953 aa29.81■■■□□ 2.36
PNKP-220ENST00000627232 TMEM132EQ6IEE7 984 aa29.8■■■□□ 2.36
PNKP-220ENST00000627232 INSRP06213 1382 aa29.79■■■□□ 2.36
PNKP-220ENST00000627232 AMER1Q5JTC6 1135 aaPredicted RBP29.79■■■□□ 2.36
PNKP-220ENST00000627232 NUTM2DQ5VT03 806 aaPredicted RBP29.77■■■□□ 2.36
PNKP-220ENST00000627232 PUS7Q96PZ0 661 aaKnown RBP29.77■■■□□ 2.36
PNKP-220ENST00000627232 A2ML1A8K2U0 1454 aa29.76■■■□□ 2.35
PNKP-220ENST00000627232 MLECQ14165 292 aa29.76■■■□□ 2.35
PNKP-220ENST00000627232 FKBP8Q14318 412 aa29.75■■■□□ 2.35
PNKP-220ENST00000627232 ESF1Q9H501 851 aaKnown RBP29.73■■■□□ 2.35
PNKP-220ENST00000627232 STAG3Q9UJ98 1225 aa29.73■■■□□ 2.35
PNKP-220ENST00000627232 ZMYM3Q14202 1370 aa29.72■■■□□ 2.35
PNKP-220ENST00000627232 ALKQ9UM73 1620 aa29.71■■■□□ 2.35
PNKP-220ENST00000627232 SMG6Q86US8 1419 aaKnown RBP29.69■■■□□ 2.34
PNKP-220ENST00000627232 TULP4Q9NRJ4 1543 aa29.67■■■□□ 2.34
PNKP-220ENST00000627232 RIMS2Q9UQ26 1411 aa29.67■■■□□ 2.34
PNKP-220ENST00000627232 EVC2Q86UK5 1308 aa29.66■■■□□ 2.34
PNKP-220ENST00000627232 PPP2R1AP30153 589 aa29.66■■■□□ 2.34
PNKP-220ENST00000627232 USP32Q8NFA0 1604 aa29.65■■■□□ 2.34
PNKP-220ENST00000627232 YTHDC2Q9H6S0 1430 aaKnown RBP29.65■■■□□ 2.34
PNKP-220ENST00000627232 PTPRMP28827 1452 aa29.65■■■□□ 2.34
PNKP-220ENST00000627232 SETD1AO15047 1707 aaKnown RBP29.63■■■□□ 2.33
PNKP-220ENST00000627232 BLMP54132 1417 aaPredicted RBP29.63■■■□□ 2.33
PNKP-220ENST00000627232 CARD14Q9BXL6 1004 aa29.62■■■□□ 2.33
PNKP-220ENST00000627232 DLC1Q96QB1 1528 aa29.6■■■□□ 2.33
PNKP-220ENST00000627232 TNRQ92752 1358 aa29.59■■■□□ 2.33
PNKP-220ENST00000627232 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.59■■■□□ 2.33
PNKP-220ENST00000627232 NUDCQ9Y266 331 aa29.59■■■□□ 2.33
PNKP-220ENST00000627232 PELP1Q8IZL8 1130 aaKnown RBP29.58■■■□□ 2.33
PNKP-220ENST00000627232 ERICH6BQ5W0A0 696 aa29.56■■■□□ 2.32
PNKP-220ENST00000627232 NINLQ9Y2I6 1382 aa29.56■■■□□ 2.32
PNKP-220ENST00000627232 UBR1Q8IWV7 1749 aa29.54■■■□□ 2.32
PNKP-220ENST00000627232 NRXN3Q9Y4C0 1643 aa29.54■■■□□ 2.32
PNKP-220ENST00000627232 STK26Q9P289 416 aa29.54■■■□□ 2.32
PNKP-220ENST00000627232 NSD3Q9BZ95 1437 aa29.53■■■□□ 2.32
PNKP-220ENST00000627232 SLC12A5Q9H2X9 1139 aa29.53■■■□□ 2.32
PNKP-220ENST00000627232 HDGFP51858 240 aaKnown RBP29.52■■■□□ 2.32
PNKP-220ENST00000627232 ANKRD36BQ8N2N9 1353 aa29.51■■■□□ 2.32
PNKP-220ENST00000627232 PDE3BQ13370 1112 aa29.5■■■□□ 2.31
PNKP-220ENST00000627232 ATAD2Q6PL18 1390 aa29.48■■■□□ 2.31
PNKP-220ENST00000627232 PRAM1Q96QH2 718 aa29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms