RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 COL17A1Q9UMD9 1497 aaPredicted RBP22.49■■□□□ 1.19
LDB3-208ENST00000623007 TMF1P82094 1093 aa22.49■■□□□ 1.19
LDB3-208ENST00000623007 ARHGEF40Q8TER5 1519 aa22.48■■□□□ 1.19
LDB3-208ENST00000623007 SETBP1Q9Y6X0 1596 aa22.47■■□□□ 1.19
LDB3-208ENST00000623007 UGGT1Q9NYU2 1555 aa22.47■■□□□ 1.19
LDB3-208ENST00000623007 MROH2AA6NES4 1674 aa22.46■■□□□ 1.19
LDB3-208ENST00000623007 PPLO60437 1756 aa22.46■■□□□ 1.19
LDB3-208ENST00000623007 PREX1Q8TCU6 1659 aa22.42■■□□□ 1.18
LDB3-208ENST00000623007 SYNMO15061 1565 aa22.42■■□□□ 1.18
LDB3-208ENST00000623007 TESK2Q96S53 571 aa22.42■■□□□ 1.18
LDB3-208ENST00000623007 SIGLEC1Q9BZZ2 1709 aa22.41■■□□□ 1.18
LDB3-208ENST00000623007 ZFYVE9O95405 1425 aa22.41■■□□□ 1.18
LDB3-208ENST00000623007 VGFO15240 615 aaPredicted RBP22.39■■□□□ 1.18
LDB3-208ENST00000623007 SCAF1Q9H7N4 1312 aaKnown RBP22.39■■□□□ 1.18
LDB3-208ENST00000623007 POLR3GLQ9BT43 218 aa22.39■■□□□ 1.17
LDB3-208ENST00000623007 PIK3C2GO75747 1445 aa22.38■■□□□ 1.17
LDB3-208ENST00000623007 RALBP1Q15311 655 aa22.38■■□□□ 1.17
LDB3-208ENST00000623007 SBNO2Q9Y2G9 1366 aa22.37■■□□□ 1.17
LDB3-208ENST00000623007 MYO3AQ8NEV4 1616 aa22.36■■□□□ 1.17
LDB3-208ENST00000623007 CHGAP10645 457 aaKnown RBP22.36■■□□□ 1.17
LDB3-208ENST00000623007 CFAP65Q6ZU64 1925 aaKnown RBP22.35■■□□□ 1.17
LDB3-208ENST00000623007 GTF3C3Q9Y5Q9 886 aa22.34■■□□□ 1.17
LDB3-208ENST00000623007 ADGRF5Q8IZF2 1346 aa22.34■■□□□ 1.17
LDB3-208ENST00000623007 ERVK-7P63135 1459 aa22.34■■□□□ 1.17
LDB3-208ENST00000623007 C14orf93Q9H972 538 aaKnown RBP22.33■■□□□ 1.17
LDB3-208ENST00000623007 NEXMIFQ5QGS0 1516 aa22.33■■□□□ 1.16
LDB3-208ENST00000623007 SPATA31D1Q6ZQQ2 1576 aa22.31■■□□□ 1.16
LDB3-208ENST00000623007 DISP3Q9P2K9 1392 aa22.3■■□□□ 1.16
LDB3-208ENST00000623007 MRS2Q9HD23 443 aa22.3■■□□□ 1.16
LDB3-208ENST00000623007 TMEM131LA2VDJ0 1609 aa22.3■■□□□ 1.16
LDB3-208ENST00000623007 CLTCQ00610 1675 aaKnown RBP22.3■■□□□ 1.16
LDB3-208ENST00000623007 CFAP70Q5T0N1 1121 aa22.3■■□□□ 1.16
LDB3-208ENST00000623007 ESF1Q9H501 851 aaKnown RBP22.3■■□□□ 1.16
LDB3-208ENST00000623007 IDI1Q13907 227 aa22.29■■□□□ 1.16
LDB3-208ENST00000623007 KDM5AP29375 1690 aaKnown RBP22.28■■□□□ 1.16
LDB3-208ENST00000623007 MYBBP1AQ9BQG0 1328 aaKnown RBP22.26■■□□□ 1.15
LDB3-208ENST00000623007 BRD4O60885 1362 aaPredicted RBP22.26■■□□□ 1.15
LDB3-208ENST00000623007 ADGRB1O14514 1584 aa22.25■■□□□ 1.15
LDB3-208ENST00000623007 PER1O15534 1290 aaPredicted RBP22.23■■□□□ 1.15
LDB3-208ENST00000623007 PUS7Q96PZ0 661 aaKnown RBP22.23■■□□□ 1.15
LDB3-208ENST00000623007 PARD3Q8TEW0 1356 aa22.22■■□□□ 1.15
LDB3-208ENST00000623007 CENPJQ9HC77 1338 aaPredicted RBP22.22■■□□□ 1.15
LDB3-208ENST00000623007 NPC1L1Q9UHC9 1359 aa22.2■■□□□ 1.14
LDB3-208ENST00000623007 STAG3Q9UJ98 1225 aa22.19■■□□□ 1.14
LDB3-208ENST00000623007 HDGFP51858 240 aaKnown RBP22.18■■□□□ 1.14
LDB3-208ENST00000623007 HNRNPUQ00839 825 aaKnown RBP eCLIP22.18■■□□□ 1.14
LDB3-208ENST00000623007 NLRP13Q86W25 1043 aa22.18■■□□□ 1.14
LDB3-208ENST00000623007 TMC1Q8TDI8 760 aa22.17■■□□□ 1.14
LDB3-208ENST00000623007 PANK3Q9H999 370 aa22.17■■□□□ 1.14
LDB3-208ENST00000623007 ZMYM3Q14202 1370 aa22.16■■□□□ 1.14
LDB3-208ENST00000623007 MYO5BQ9ULV0 1848 aa22.16■■□□□ 1.14
LDB3-208ENST00000623007 KNSTRNQ9Y448 316 aa22.16■■□□□ 1.14
LDB3-208ENST00000623007 QRICH2Q9H0J4 1663 aa22.15■■□□□ 1.14
LDB3-208ENST00000623007 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.15■■□□□ 1.14
LDB3-208ENST00000623007 INSRP06213 1382 aa22.15■■□□□ 1.14
LDB3-208ENST00000623007 ZBED9Q6R2W3 1325 aa22.14■■□□□ 1.13
LDB3-208ENST00000623007 MYOM1P52179 1685 aa22.13■■□□□ 1.13
LDB3-208ENST00000623007 FBXO31Q5XUX0 539 aaPredicted RBP22.13■■□□□ 1.13
LDB3-208ENST00000623007 A2ML1A8K2U0 1454 aa22.12■■□□□ 1.13
LDB3-208ENST00000623007 ASXL1Q8IXJ9 1541 aa22.12■■□□□ 1.13
LDB3-208ENST00000623007 FAM9BQ8IZU0 186 aa22.11■■□□□ 1.13
LDB3-208ENST00000623007 ARHGEF28Q8N1W1 1705 aaKnown RBP22.11■■□□□ 1.13
LDB3-208ENST00000623007 CCDC184Q52MB2 194 aa22.1■■□□□ 1.13
LDB3-208ENST00000623007 MLECQ14165 292 aa22.09■■□□□ 1.13
LDB3-208ENST00000623007 NINLQ9Y2I6 1382 aa22.09■■□□□ 1.13
LDB3-208ENST00000623007 EVC2Q86UK5 1308 aa22.08■■□□□ 1.13
LDB3-208ENST00000623007 PNISRQ8TF01 805 aaKnown RBP22.08■■□□□ 1.13
LDB3-208ENST00000623007 TRAK1Q9UPV9 953 aa22.08■■□□□ 1.13
LDB3-208ENST00000623007 TNRQ92752 1358 aa22.07■■□□□ 1.12
LDB3-208ENST00000623007 RIMS2Q9UQ26 1411 aa22.07■■□□□ 1.12
LDB3-208ENST00000623007 LRPPRCP42704 1394 aaKnown RBP22.06■■□□□ 1.12
LDB3-208ENST00000623007 NLRP1Q9C000 1473 aa22.06■■□□□ 1.12
LDB3-208ENST00000623007 ALKQ9UM73 1620 aa22.06■■□□□ 1.12
LDB3-208ENST00000623007 DLC1Q96QB1 1528 aa22.05■■□□□ 1.12
LDB3-208ENST00000623007 NEFLP07196 543 aa22.04■■□□□ 1.12
LDB3-208ENST00000623007 TMEM132EQ6IEE7 984 aa22.03■■□□□ 1.12
LDB3-208ENST00000623007 YTHDC2Q9H6S0 1430 aaKnown RBP22.03■■□□□ 1.12
LDB3-208ENST00000623007 AMER1Q5JTC6 1135 aaPredicted RBP22.01■■□□□ 1.11
LDB3-208ENST00000623007 USP32Q8NFA0 1604 aa22■■□□□ 1.11
LDB3-208ENST00000623007 CC2D1BQ5T0F9 858 aaKnown RBP21.99■■□□□ 1.11
LDB3-208ENST00000623007 PTPRMP28827 1452 aa21.98■■□□□ 1.11
LDB3-208ENST00000623007 ATAD2Q6PL18 1390 aa21.97■■□□□ 1.11
LDB3-208ENST00000623007 NUTM2DQ5VT03 806 aaPredicted RBP21.97■■□□□ 1.11
LDB3-208ENST00000623007 UBR1Q8IWV7 1749 aa21.96■■□□□ 1.11
LDB3-208ENST00000623007 NSD2O96028 1365 aa21.95■■□□□ 1.1
LDB3-208ENST00000623007 ABCC11Q96J66 1382 aa21.95■■□□□ 1.1
LDB3-208ENST00000623007 FER1L4A9Z1Z3 1794 aa21.95■■□□□ 1.1
LDB3-208ENST00000623007 CNGB1Q14028 1251 aaPredicted RBP21.95■■□□□ 1.1
LDB3-208ENST00000623007 PELP1Q8IZL8 1130 aaKnown RBP21.95■■□□□ 1.1
LDB3-208ENST00000623007 SIRT1Q96EB6 747 aa21.95■■□□□ 1.1
LDB3-208ENST00000623007 SETD1AO15047 1707 aaKnown RBP21.94■■□□□ 1.1
LDB3-208ENST00000623007 TMEM2Q9UHN6 1383 aa21.94■■□□□ 1.1
LDB3-208ENST00000623007 TULP4Q9NRJ4 1543 aa21.94■■□□□ 1.1
LDB3-208ENST00000623007 ANKRD36BQ8N2N9 1353 aa21.93■■□□□ 1.1
LDB3-208ENST00000623007 POGKQ9P215 609 aa21.93■■□□□ 1.1
LDB3-208ENST00000623007 AEBP2Q6ZN18 517 aaPredicted RBP21.91■■□□□ 1.1
LDB3-208ENST00000623007 KNDC1Q76NI1 1749 aa21.91■■□□□ 1.1
LDB3-208ENST00000623007 PPP2R1AP30153 589 aa21.91■■□□□ 1.1
LDB3-208ENST00000623007 ERICH6BQ5W0A0 696 aa21.91■■□□□ 1.1
LDB3-208ENST00000623007 C3P01024 1663 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms