RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 TTC37Q6PGP7 1564 aa13.41□□□□□ -0.26
VPS11-207ENST00000620429 ZNF326Q5BKZ1 582 aaKnown RBP13.41□□□□□ -0.26
VPS11-207ENST00000620429 SMAP1Q8IYB5 467 aaPredicted RBP13.41□□□□□ -0.26
VPS11-207ENST00000620429 CDC42BPBQ9Y5S2 1711 aa13.4□□□□□ -0.26
VPS11-207ENST00000620429 XRCC6P12956 609 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS11-207ENST00000620429 TMC1Q8TDI8 760 aa13.4□□□□□ -0.26
VPS11-207ENST00000620429 SHANK2Q9UPX8 1470 aa13.4□□□□□ -0.26
VPS11-207ENST00000620429 FSD2A1L4K1 749 aa13.4□□□□□ -0.27
VPS11-207ENST00000620429 BBXQ8WY36 941 aaPredicted RBP13.4□□□□□ -0.27
VPS11-207ENST00000620429 MAP7D2Q96T17 732 aa13.39□□□□□ -0.27
VPS11-207ENST00000620429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.39□□□□□ -0.27
VPS11-207ENST00000620429 ZFYVE16Q7Z3T8 1539 aa13.39□□□□□ -0.27
VPS11-207ENST00000620429 NAP1L2Q9ULW6 460 aaPredicted RBP13.39□□□□□ -0.27
VPS11-207ENST00000620429 LMTK3Q96Q04 1460 aa13.38□□□□□ -0.27
VPS11-207ENST00000620429 GTF2E1P29083 439 aaPredicted RBP13.38□□□□□ -0.27
VPS11-207ENST00000620429 PNISRQ8TF01 805 aaKnown RBP13.38□□□□□ -0.27
VPS11-207ENST00000620429 PREX2Q70Z35 1606 aa13.38□□□□□ -0.27
VPS11-207ENST00000620429 ARHGAP5Q13017 1502 aa13.38□□□□□ -0.27
VPS11-207ENST00000620429 REREQ9P2R6 1566 aa13.38□□□□□ -0.27
VPS11-207ENST00000620429 EXOC6Q8TAG9 804 aa13.38□□□□□ -0.27
VPS11-207ENST00000620429 USP47Q96K76 1375 aa13.38□□□□□ -0.27
VPS11-207ENST00000620429 SYCP2Q9BX26 1530 aa13.37□□□□□ -0.27
VPS11-207ENST00000620429 RIMS1Q86UR5 1692 aaKnown RBP13.37□□□□□ -0.27
VPS11-207ENST00000620429 RRP1P56182 461 aaKnown RBP13.37□□□□□ -0.27
VPS11-207ENST00000620429 CCDC141Q6ZP82 1450 aa13.37□□□□□ -0.27
VPS11-207ENST00000620429 ARHGEF5Q12774 1597 aa13.36□□□□□ -0.27
VPS11-207ENST00000620429 ESPNB1AK53 854 aa13.36□□□□□ -0.27
VPS11-207ENST00000620429 GOLGA6L3A6NEY3 463 aa13.35□□□□□ -0.27
VPS11-207ENST00000620429 NCLP19338 710 aaKnown RBP13.35□□□□□ -0.27
VPS11-207ENST00000620429 MYO5CQ9NQX4 1742 aa13.35□□□□□ -0.27
VPS11-207ENST00000620429 FER1L4A9Z1Z3 1794 aa13.35□□□□□ -0.27
VPS11-207ENST00000620429 STAC3Q96MF2 364 aa13.34□□□□□ -0.27
VPS11-207ENST00000620429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.34□□□□□ -0.279e-6■■■□□ 18.9
VPS11-207ENST00000620429 PREX1Q8TCU6 1659 aa13.34□□□□□ -0.27
VPS11-207ENST00000620429 ARHGEF12Q9NZN5 1544 aa13.33□□□□□ -0.28
VPS11-207ENST00000620429 CANXP27824 592 aaKnown RBP13.33□□□□□ -0.28
VPS11-207ENST00000620429 TERF1P54274 439 aa13.33□□□□□ -0.28
VPS11-207ENST00000620429 IPO4Q8TEX9 1081 aaKnown RBP13.33□□□□□ -0.28
VPS11-207ENST00000620429 PLCH2O75038 1416 aa13.33□□□□□ -0.28
VPS11-207ENST00000620429 UTP14CQ5TAP6 766 aaKnown RBP13.33□□□□□ -0.28
VPS11-207ENST00000620429 KDM2AQ9Y2K7 1162 aa13.32□□□□□ -0.28
VPS11-207ENST00000620429 ARID4BQ4LE39 1312 aaPredicted RBP13.32□□□□□ -0.28
VPS11-207ENST00000620429 KDM5CP41229 1560 aa13.3□□□□□ -0.28
VPS11-207ENST00000620429 PANK2Q9BZ23 570 aa13.3□□□□□ -0.28
VPS11-207ENST00000620429 ROCK2O75116 1388 aaKnown RBP13.3□□□□□ -0.28
VPS11-207ENST00000620429 FAM161AQ3B820 660 aa13.3□□□□□ -0.28
VPS11-207ENST00000620429 RSPH4AQ5TD94 716 aa13.3□□□□□ -0.28
VPS11-207ENST00000620429 RCAN3Q9UKA8 241 aa13.3□□□□□ -0.28
VPS11-207ENST00000620429 ATP10AO60312 1499 aa13.29□□□□□ -0.28
VPS11-207ENST00000620429 MRE11P49959 708 aa13.29□□□□□ -0.28
VPS11-207ENST00000620429 KDM5DQ9BY66 1539 aa13.29□□□□□ -0.28
VPS11-207ENST00000620429 ERBB4Q15303 1308 aa13.29□□□□□ -0.28
VPS11-207ENST00000620429 LRPPRCP42704 1394 aaKnown RBP13.28□□□□□ -0.28
VPS11-207ENST00000620429 RAPGEF3O95398 923 aa13.28□□□□□ -0.28
VPS11-207ENST00000620429 KIAA1211Q6ZU35 1233 aa13.28□□□□□ -0.28
VPS11-207ENST00000620429 PLEKHH2Q8IVE3 1493 aa13.28□□□□□ -0.28
VPS11-207ENST00000620429 FAM135AQ9P2D6 1515 aa13.28□□□□□ -0.28
VPS11-207ENST00000620429 C8orf34Q49A92 452 aa13.27□□□□□ -0.28
VPS11-207ENST00000620429 CHMP4BQ9H444 224 aaKnown RBP13.27□□□□□ -0.28
VPS11-207ENST00000620429 ZNF518AQ6AHZ1 1483 aa13.27□□□□□ -0.28
VPS11-207ENST00000620429 MYBBP1AQ9BQG0 1328 aaKnown RBP13.27□□□□□ -0.28
VPS11-207ENST00000620429 SETD1BQ9UPS6 1966 aaKnown RBP13.27□□□□□ -0.28
VPS11-207ENST00000620429 BRD4O60885 1362 aaPredicted RBP13.27□□□□□ -0.28
VPS11-207ENST00000620429 CARD11Q9BXL7 1154 aa13.27□□□□□ -0.29
VPS11-207ENST00000620429 AGLP35573 1532 aa13.27□□□□□ -0.29
VPS11-207ENST00000620429 TRAPPC8Q9Y2L5 1435 aa13.27□□□□□ -0.29
VPS11-207ENST00000620429 EFCAB2Q5VUJ9 269 aa13.26□□□□□ -0.29
VPS11-207ENST00000620429 MTERF4Q7Z6M4 381 aaKnown RBP13.26□□□□□ -0.29
VPS11-207ENST00000620429 ISY1Q9ULR0 285 aaKnown RBP13.26□□□□□ -0.29
VPS11-207ENST00000620429 IQSEC2Q5JU85 1478 aa13.26□□□□□ -0.29
VPS11-207ENST00000620429 RIPK4P57078 832 aa13.26□□□□□ -0.29
VPS11-207ENST00000620429 MYH16Q9H6N6 1097 aa13.26□□□□□ -0.29
VPS11-207ENST00000620429 DMTNQ08495 405 aa13.26□□□□□ -0.29
VPS11-207ENST00000620429 RGL3Q3MIN7 710 aa13.26□□□□□ -0.29
VPS11-207ENST00000620429 RALBP1Q15311 655 aa13.25□□□□□ -0.29
VPS11-207ENST00000620429 AFAP1Q8N556 730 aa13.25□□□□□ -0.29
VPS11-207ENST00000620429 KTN1Q86UP2 1357 aaKnown RBP13.25□□□□□ -0.29
VPS11-207ENST00000620429 SIGLEC1Q9BZZ2 1709 aa13.24□□□□□ -0.29
VPS11-207ENST00000620429 VIRMAQ69YN4 1812 aaKnown RBP13.24□□□□□ -0.29
VPS11-207ENST00000620429 ZHX1Q9UKY1 873 aaPredicted RBP13.24□□□□□ -0.29
VPS11-207ENST00000620429 MAST1Q9Y2H9 1570 aa13.23□□□□□ -0.29
VPS11-207ENST00000620429 ST20-MTHFSA0A0A6YYL1 179 aa13.23□□□□□ -0.29
VPS11-207ENST00000620429 DMRT2Q9Y5R5 561 aa13.23□□□□□ -0.29
VPS11-207ENST00000620429 PLA2R1Q13018 1463 aa13.23□□□□□ -0.29
VPS11-207ENST00000620429 MLH3Q9UHC1 1453 aa13.23□□□□□ -0.29
VPS11-207ENST00000620429 SCAPERQ9BY12 1400 aa13.23□□□□□ -0.29
VPS11-207ENST00000620429 MROH2AA6NES4 1674 aa13.22□□□□□ -0.29
VPS11-207ENST00000620429 OFD1O75665 1012 aa13.22□□□□□ -0.29
VPS11-207ENST00000620429 KDM2BQ8NHM5 1336 aa13.22□□□□□ -0.29
VPS11-207ENST00000620429 PDE3BQ13370 1112 aa13.22□□□□□ -0.29
VPS11-207ENST00000620429 UHRF1BP1Q6BDS2 1440 aa13.22□□□□□ -0.29
VPS11-207ENST00000620429 RALGAPBQ86X10 1494 aa13.21□□□□□ -0.29
VPS11-207ENST00000620429 ANTXR1Q9H6X2 564 aa13.21□□□□□ -0.29
VPS11-207ENST00000620429 ABCC1P33527 1531 aa13.21□□□□□ -0.3
VPS11-207ENST00000620429 TRIM44Q96DX7 344 aaPredicted RBP13.2□□□□□ -0.3
VPS11-207ENST00000620429 YEATS2Q9ULM3 1422 aa13.2□□□□□ -0.3
VPS11-207ENST00000620429 CCDC144AA2RUR9 1427 aa13.2□□□□□ -0.3
VPS11-207ENST00000620429 PTPRTO14522 1441 aa13.2□□□□□ -0.3
VPS11-207ENST00000620429 PLIN1O60240 522 aa13.2□□□□□ -0.3
VPS11-207ENST00000620429 NLRP13Q86W25 1043 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 1087.7 ms