RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 NOS1P29475 1434 aa27.68■■■□□ 2.02
MMP28-207ENST00000619655 TMF1P82094 1093 aa27.66■■■□□ 2.02
MMP28-207ENST00000619655 SYNMO15061 1565 aa27.65■■■□□ 2.02
MMP28-207ENST00000619655 SCAF11Q99590 1463 aaKnown RBP27.65■■■□□ 2.02
MMP28-207ENST00000619655 KIAA1210Q9ULL0 1709 aa27.63■■■□□ 2.01
MMP28-207ENST00000619655 FAM9BQ8IZU0 186 aa27.62■■■□□ 2.01
MMP28-207ENST00000619655 ARHGAP31Q2M1Z3 1444 aa27.62■■■□□ 2.01
MMP28-207ENST00000619655 HNRNPUQ00839 825 aaKnown RBP eCLIP27.61■■■□□ 2.01
MMP28-207ENST00000619655 MLECQ14165 292 aa27.61■■■□□ 2.01
MMP28-207ENST00000619655 NUTM2DQ5VT03 806 aaPredicted RBP27.61■■■□□ 2.01
MMP28-207ENST00000619655 PPLO60437 1756 aa27.6■■■□□ 2.01
MMP28-207ENST00000619655 PIK3C2BO00750 1634 aa27.58■■■□□ 2.01
MMP28-207ENST00000619655 IDI1Q13907 227 aa27.57■■■□□ 2
MMP28-207ENST00000619655 EIF3AQ14152 1382 aaKnown RBP27.57■■■□□ 2
MMP28-207ENST00000619655 NRXN1Q9ULB1 1477 aa27.56■■■□□ 2
MMP28-207ENST00000619655 FBXO31Q5XUX0 539 aaPredicted RBP27.56■■■□□ 2
MMP28-207ENST00000619655 PREX1Q8TCU6 1659 aa27.56■■■□□ 2
MMP28-207ENST00000619655 REREQ9P2R6 1566 aa27.55■■■□□ 2
MMP28-207ENST00000619655 SENP3Q9H4L4 574 aaPredicted RBP27.53■■■□□ 2
MMP28-207ENST00000619655 RPGRIP1LQ68CZ1 1315 aa27.52■■■□□ 2
MMP28-207ENST00000619655 AGLP35573 1532 aa27.52■■■□□ 2
MMP28-207ENST00000619655 PIK3C2GO75747 1445 aa27.52■■■□□ 2
MMP28-207ENST00000619655 ARHGEF40Q8TER5 1519 aa27.51■■■□□ 2
MMP28-207ENST00000619655 PANK3Q9H999 370 aa27.51■■□□□ 1.99
MMP28-207ENST00000619655 SLC52A1Q9NWF4 448 aa27.51■■□□□ 1.99
MMP28-207ENST00000619655 CLTCQ00610 1675 aaKnown RBP27.51■■□□□ 1.99
MMP28-207ENST00000619655 MYO5BQ9ULV0 1848 aa27.48■■□□□ 1.99
MMP28-207ENST00000619655 TMEM132EQ6IEE7 984 aa27.47■■□□□ 1.99
MMP28-207ENST00000619655 NEXMIFQ5QGS0 1516 aa27.47■■□□□ 1.99
MMP28-207ENST00000619655 PER1O15534 1290 aaPredicted RBP27.46■■□□□ 1.99
MMP28-207ENST00000619655 C14orf93Q9H972 538 aaKnown RBP27.46■■□□□ 1.99
MMP28-207ENST00000619655 TRAK1Q9UPV9 953 aa27.46■■□□□ 1.99
MMP28-207ENST00000619655 VGFO15240 615 aaPredicted RBP27.46■■□□□ 1.99
MMP28-207ENST00000619655 CDCA8Q53HL2 280 aa27.45■■□□□ 1.98
MMP28-207ENST00000619655 ERVK-7P63135 1459 aa27.45■■□□□ 1.98
MMP28-207ENST00000619655 KTN1Q86UP2 1357 aaKnown RBP27.44■■□□□ 1.98
MMP28-207ENST00000619655 CC2D1BQ5T0F9 858 aaKnown RBP27.44■■□□□ 1.98
MMP28-207ENST00000619655 RALBP1Q15311 655 aa27.44■■□□□ 1.98
MMP28-207ENST00000619655 TMC1Q8TDI8 760 aa27.44■■□□□ 1.98
MMP28-207ENST00000619655 SETBP1Q9Y6X0 1596 aa27.43■■□□□ 1.98
MMP28-207ENST00000619655 PPP6R1Q9UPN7 881 aa27.42■■□□□ 1.98
MMP28-207ENST00000619655 STAG3Q9UJ98 1225 aa27.42■■□□□ 1.98
MMP28-207ENST00000619655 MYBBP1AQ9BQG0 1328 aaKnown RBP27.42■■□□□ 1.98
MMP28-207ENST00000619655 TMEM131LA2VDJ0 1609 aa27.41■■□□□ 1.98
MMP28-207ENST00000619655 ESF1Q9H501 851 aaKnown RBP27.41■■□□□ 1.98
MMP28-207ENST00000619655 ADGRB1O14514 1584 aa27.39■■□□□ 1.97
MMP28-207ENST00000619655 KDM5AP29375 1690 aaKnown RBP27.38■■□□□ 1.97
MMP28-207ENST00000619655 CENPJQ9HC77 1338 aaPredicted RBP27.38■■□□□ 1.97
MMP28-207ENST00000619655 PARD3Q8TEW0 1356 aa27.36■■□□□ 1.97
MMP28-207ENST00000619655 MYO3AQ8NEV4 1616 aa27.34■■□□□ 1.97
MMP28-207ENST00000619655 TRHP20396 242 aaPredicted RBP27.34■■□□□ 1.97
MMP28-207ENST00000619655 MYOM1P52179 1685 aa27.33■■□□□ 1.97
MMP28-207ENST00000619655 KNSTRNQ9Y448 316 aa27.33■■□□□ 1.97
MMP28-207ENST00000619655 BRD4O60885 1362 aaPredicted RBP27.32■■□□□ 1.96
MMP28-207ENST00000619655 SLC24A1O60721 1099 aa27.32■■□□□ 1.96
MMP28-207ENST00000619655 PNISRQ8TF01 805 aaKnown RBP27.32■■□□□ 1.96
MMP28-207ENST00000619655 QRICH2Q9H0J4 1663 aa27.31■■□□□ 1.96
MMP28-207ENST00000619655 SENP3-EIF4A1A0A087X0R7 540 aa27.3■■□□□ 1.96
MMP28-207ENST00000619655 SUPT16HQ9Y5B9 1047 aaKnown RBP27.3■■□□□ 1.96
MMP28-207ENST00000619655 NLRP13Q86W25 1043 aa27.3■■□□□ 1.96
MMP28-207ENST00000619655 SPATA31D1Q6ZQQ2 1576 aa27.3■■□□□ 1.96
MMP28-207ENST00000619655 ZMYM3Q14202 1370 aa27.29■■□□□ 1.96
MMP28-207ENST00000619655 STK26Q9P289 416 aa27.28■■□□□ 1.96
MMP28-207ENST00000619655 ZFYVE9O95405 1425 aa27.28■■□□□ 1.96
MMP28-207ENST00000619655 SBNO2Q9Y2G9 1366 aa27.27■■□□□ 1.96
MMP28-207ENST00000619655 ZBED9Q6R2W3 1325 aa27.27■■□□□ 1.96
MMP28-207ENST00000619655 SAFB2Q14151 953 aaKnown RBP eCLIP27.25■■□□□ 1.95
MMP28-207ENST00000619655 ARHGEF28Q8N1W1 1705 aaKnown RBP27.23■■□□□ 1.95
MMP28-207ENST00000619655 A2ML1A8K2U0 1454 aa27.22■■□□□ 1.95
MMP28-207ENST00000619655 FKBP8Q14318 412 aa27.22■■□□□ 1.95
MMP28-207ENST00000619655 ASXL1Q8IXJ9 1541 aa27.21■■□□□ 1.95
MMP28-207ENST00000619655 AMER1Q5JTC6 1135 aaPredicted RBP27.21■■□□□ 1.95
MMP28-207ENST00000619655 NEFLP07196 543 aa27.18■■□□□ 1.94
MMP28-207ENST00000619655 LRPPRCP42704 1394 aaKnown RBP27.17■■□□□ 1.94
MMP28-207ENST00000619655 RIMS2Q9UQ26 1411 aa27.17■■□□□ 1.94
MMP28-207ENST00000619655 ALKQ9UM73 1620 aa27.15■■□□□ 1.94
MMP28-207ENST00000619655 PLPPR3Q6T4P5 718 aa27.15■■□□□ 1.94
MMP28-207ENST00000619655 BCANQ96GW7 911 aa27.15■■□□□ 1.94
MMP28-207ENST00000619655 CARD14Q9BXL6 1004 aa27.14■■□□□ 1.94
MMP28-207ENST00000619655 SLC12A5Q9H2X9 1139 aa27.13■■□□□ 1.93
MMP28-207ENST00000619655 EVC2Q86UK5 1308 aa27.13■■□□□ 1.93
MMP28-207ENST00000619655 YTHDC2Q9H6S0 1430 aaKnown RBP27.12■■□□□ 1.93
MMP28-207ENST00000619655 TNRQ92752 1358 aa27.12■■□□□ 1.93
MMP28-207ENST00000619655 PPP2R1AP30153 589 aa27.11■■□□□ 1.93
MMP28-207ENST00000619655 PRAM1Q96QH2 718 aa27.11■■□□□ 1.93
MMP28-207ENST00000619655 MYT1Q01538 1121 aa27.11■■□□□ 1.93
MMP28-207ENST00000619655 POGKQ9P215 609 aa27.11■■□□□ 1.93
MMP28-207ENST00000619655 TULP4Q9NRJ4 1543 aa27.11■■□□□ 1.93
MMP28-207ENST00000619655 CABP2Q9NPB3 220 aa27.1■■□□□ 1.93
MMP28-207ENST00000619655 CEBPAP49715 358 aaPredicted RBP27.1■■□□□ 1.93
MMP28-207ENST00000619655 PTPRMP28827 1452 aa27.08■■□□□ 1.93
MMP28-207ENST00000619655 MINK1Q8N4C8 1332 aaPredicted RBP27.08■■□□□ 1.93
MMP28-207ENST00000619655 SALL2Q9Y467 1007 aaPredicted RBP27.07■■□□□ 1.92
MMP28-207ENST00000619655 SRPK2P78362 688 aaKnown RBP27.06■■□□□ 1.92
MMP28-207ENST00000619655 NSD3Q9BZ95 1437 aa27.06■■□□□ 1.92
MMP28-207ENST00000619655 NPC1L1Q9UHC9 1359 aa27.05■■□□□ 1.92
MMP28-207ENST00000619655 IRX6P78412 446 aaPredicted RBP27.03■■□□□ 1.92
MMP28-207ENST00000619655 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.03■■□□□ 1.92
MMP28-207ENST00000619655 UBR1Q8IWV7 1749 aa26.99■■□□□ 1.91
MMP28-207ENST00000619655 SETD1AO15047 1707 aaKnown RBP26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms