RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 KIF3BO15066 747 aa7.54□□□□□ -1.2
SNCA-213ENST00000618500 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.54□□□□□ -1.2
SNCA-213ENST00000618500 MYO5BQ9ULV0 1848 aa7.54□□□□□ -1.2
SNCA-213ENST00000618500 UNC13BO14795 1591 aa7.53□□□□□ -1.2
SNCA-213ENST00000618500 ATP1B4Q9UN42 357 aaPredicted RBP7.53□□□□□ -1.2
SNCA-213ENST00000618500 MARF1Q9Y4F3 1742 aaKnown RBP7.53□□□□□ -1.2
SNCA-213ENST00000618500 RANGAP1P46060 587 aaPredicted RBP7.53□□□□□ -1.2
SNCA-213ENST00000618500 ZNF777Q9ULD5 760 aaPredicted RBP7.53□□□□□ -1.2
SNCA-213ENST00000618500 PLEKHG1Q9ULL1 1385 aa7.53□□□□□ -1.2
SNCA-213ENST00000618500 TRPM2O94759 1503 aa7.52□□□□□ -1.21
SNCA-213ENST00000618500 TMEM94Q12767 1356 aa7.52□□□□□ -1.21
SNCA-213ENST00000618500 MYOM3Q5VTT5 1437 aa7.52□□□□□ -1.21
SNCA-213ENST00000618500 ADGRL2O95490 1459 aa7.52□□□□□ -1.21
SNCA-213ENST00000618500 PRAG1Q86YV5 1406 aa7.51□□□□□ -1.21
SNCA-213ENST00000618500 SETD5Q9C0A6 1442 aa7.51□□□□□ -1.21
SNCA-213ENST00000618500 MSH6P52701 1360 aa7.51□□□□□ -1.21
SNCA-213ENST00000618500 ZNF772Q68DY9 489 aaPredicted RBP7.51□□□□□ -1.21
SNCA-213ENST00000618500 SETBP1Q9Y6X0 1596 aa7.51□□□□□ -1.21
SNCA-213ENST00000618500 UPF1Q92900 1129 aaKnown RBP eCLIP7.5□□□□□ -1.21
SNCA-213ENST00000618500 ZNF644Q9H582 1327 aaPredicted RBP7.5□□□□□ -1.21
SNCA-213ENST00000618500 EID1Q9Y6B2 187 aa7.5□□□□□ -1.21
SNCA-213ENST00000618500 ASXL1Q8IXJ9 1541 aa7.5□□□□□ -1.21
SNCA-213ENST00000618500 LTKP29376 864 aa7.49□□□□□ -1.21
SNCA-213ENST00000618500 NRXN3Q9Y4C0 1643 aa7.49□□□□□ -1.21
SNCA-213ENST00000618500 KANK1Q14678 1352 aa7.47□□□□□ -1.21
SNCA-213ENST00000618500 TXNDC2Q86VQ3 553 aa7.47□□□□□ -1.21
SNCA-213ENST00000618500 CFAP65Q6ZU64 1925 aaKnown RBP7.46□□□□□ -1.21
SNCA-213ENST00000618500 TSPY4P0CV99 314 aa7.46□□□□□ -1.21
SNCA-213ENST00000618500 TSPY10P0CW01 314 aa7.46□□□□□ -1.21
SNCA-213ENST00000618500 NALCNQ8IZF0 1738 aa7.46□□□□□ -1.21
SNCA-213ENST00000618500 RGS12O14924 1447 aa7.46□□□□□ -1.21
SNCA-213ENST00000618500 E9PCH4 1651 aa7.46□□□□□ -1.22
SNCA-213ENST00000618500 KIF15Q9NS87 1388 aa7.45□□□□□ -1.22
SNCA-213ENST00000618500 ABCC5O15440 1437 aa7.45□□□□□ -1.22
SNCA-213ENST00000618500 DAPK1P53355 1430 aa7.45□□□□□ -1.22
SNCA-213ENST00000618500 PTCH1Q13635 1447 aa7.45□□□□□ -1.22
SNCA-213ENST00000618500 ADAMTS13Q76LX8 1427 aa7.45□□□□□ -1.22
SNCA-213ENST00000618500 SLC52A1Q9NWF4 448 aa7.44□□□□□ -1.22
SNCA-213ENST00000618500 SLAIN2Q9P270 581 aa7.44□□□□□ -1.22
SNCA-213ENST00000618500 VPS8Q8N3P4 1428 aa7.44□□□□□ -1.22
SNCA-213ENST00000618500 RIMS2Q9UQ26 1411 aa7.43□□□□□ -1.22
SNCA-213ENST00000618500 TBX22Q9Y458 520 aa7.43□□□□□ -1.22
SNCA-213ENST00000618500 ATAD2Q6PL18 1390 aa7.43□□□□□ -1.22
SNCA-213ENST00000618500 MST1RQ04912 1400 aa7.43□□□□□ -1.22
SNCA-213ENST00000618500 ATRNO75882 1429 aa7.42□□□□□ -1.22
SNCA-213ENST00000618500 PROSER2Q86WR7 435 aaPredicted RBP7.41□□□□□ -1.22
SNCA-213ENST00000618500 RXRBP28702 533 aa7.41□□□□□ -1.22
SNCA-213ENST00000618500 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.41□□□□□ -1.22
SNCA-213ENST00000618500 NWD2Q9ULI1 1742 aa7.41□□□□□ -1.22
SNCA-213ENST00000618500 HDGFP51858 240 aaKnown RBP7.41□□□□□ -1.22
SNCA-213ENST00000618500 CADPS2Q86UW7 1296 aa7.41□□□□□ -1.22
SNCA-213ENST00000618500 CCDC125Q86Z20 511 aa7.4□□□□□ -1.22
SNCA-213ENST00000618500 KNDC1Q76NI1 1749 aa7.4□□□□□ -1.22
SNCA-213ENST00000618500 PNPLA6Q8IY17 1366 aa7.4□□□□□ -1.23
SNCA-213ENST00000618500 ANKRD30AQ9BXX3 1397 aa7.4□□□□□ -1.23
SNCA-213ENST00000618500 ADGRL3Q9HAR2 1447 aa7.4□□□□□ -1.23
SNCA-213ENST00000618500 CDC42BPGQ6DT37 1551 aa7.39□□□□□ -1.23
SNCA-213ENST00000618500 KIF1AQ12756 1690 aa7.39□□□□□ -1.23
SNCA-213ENST00000618500 RGPD1P0DJD0 1748 aa7.38□□□□□ -1.23
SNCA-213ENST00000618500 RBM6P78332 1123 aaKnown RBP7.38□□□□□ -1.23
SNCA-213ENST00000618500 IDI1Q13907 227 aa7.38□□□□□ -1.23
SNCA-213ENST00000618500 C19orf44Q9H6X5 657 aa7.38□□□□□ -1.23
SNCA-213ENST00000618500 ABCA3Q99758 1704 aa7.38□□□□□ -1.23
SNCA-213ENST00000618500 PTPRUQ92729 1446 aa7.38□□□□□ -1.23
SNCA-213ENST00000618500 MYOM2P54296 1465 aa7.37□□□□□ -1.23
SNCA-213ENST00000618500 NEXMIFQ5QGS0 1516 aa7.37□□□□□ -1.23
SNCA-213ENST00000618500 AFF2P51816 1311 aa7.36□□□□□ -1.23
SNCA-213ENST00000618500 MEX3CQ5U5Q3 659 aaKnown RBP7.36□□□□□ -1.23
SNCA-213ENST00000618500 KIF1BO60333 1816 aa7.36□□□□□ -1.23
SNCA-213ENST00000618500 BRINP3Q76B58 766 aa7.35□□□□□ -1.23
SNCA-213ENST00000618500 PLCH1Q4KWH8 1693 aa7.35□□□□□ -1.23
SNCA-213ENST00000618500 BRWD3Q6RI45 1802 aa7.35□□□□□ -1.23
SNCA-213ENST00000618500 ROCK1Q13464 1354 aa7.35□□□□□ -1.23
SNCA-213ENST00000618500 NRAPQ86VF7 1730 aa7.34□□□□□ -1.23
SNCA-213ENST00000618500 GLI3P10071 1580 aa7.34□□□□□ -1.23
SNCA-213ENST00000618500 PPLO60437 1756 aa7.34□□□□□ -1.23
SNCA-213ENST00000618500 NGLY1Q96IV0 654 aa7.34□□□□□ -1.23
SNCA-213ENST00000618500 PXDNQ92626 1479 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 LRRC59Q96AG4 307 aaKnown RBP7.33□□□□□ -1.24
SNCA-213ENST00000618500 TNS1Q9HBL0 1735 aaKnown RBP7.33□□□□□ -1.24
SNCA-213ENST00000618500 FMN2Q9NZ56 1722 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 USP32Q8NFA0 1604 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 C1orf167Q5SNV9 1468 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 RGPD3A6NKT7 1758 aaPredicted RBP7.33□□□□□ -1.24
SNCA-213ENST00000618500 RGPD4Q7Z3J3 1758 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 ATF3P18847 181 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 FNBP4Q8N3X1 1017 aaPredicted RBP7.33□□□□□ -1.24
SNCA-213ENST00000618500 BLMP54132 1417 aaPredicted RBP7.33□□□□□ -1.24
SNCA-213ENST00000618500 IFT172Q9UG01 1749 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 BCL9LQ86UU0 1499 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 STAG3Q9UJ98 1225 aa7.33□□□□□ -1.24
SNCA-213ENST00000618500 RREB1Q92766 1687 aa7.32□□□□□ -1.24
SNCA-213ENST00000618500 ANKRD50Q9ULJ7 1429 aa7.32□□□□□ -1.24
SNCA-213ENST00000618500 SLC26A8Q96RN1 970 aa7.32□□□□□ -1.24
SNCA-213ENST00000618500 SOS2Q07890 1332 aaPredicted RBP7.32□□□□□ -1.24
SNCA-213ENST00000618500 TRIM52Q96A61 297 aa7.32□□□□□ -1.24
SNCA-213ENST00000618500 CLTCL1P53675 1640 aa7.32□□□□□ -1.24
SNCA-213ENST00000618500 ZRANB1Q9UGI0 708 aa7.31□□□□□ -1.24
SNCA-213ENST00000618500 DISP2A7MBM2 1401 aa7.31□□□□□ -1.24
SNCA-213ENST00000618500 SLIT2O94813 1529 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms