RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ARHGAP23Q9P227 1491 aa24.12■■□□□ 1.45
BRCA1-228ENST00000618469 SLIT1O75093 1534 aa24.11■■□□□ 1.45
BRCA1-228ENST00000618469 EID1Q9Y6B2 187 aa24.11■■□□□ 1.45
BRCA1-228ENST00000618469 STAG3Q9UJ98 1225 aa24.09■■□□□ 1.45
BRCA1-228ENST00000618469 TMEM94Q12767 1356 aa24.08■■□□□ 1.45
BRCA1-228ENST00000618469 SPHKAPQ2M3C7 1700 aa24.08■■□□□ 1.45
BRCA1-228ENST00000618469 IDI1Q13907 227 aa24.07■■□□□ 1.44
BRCA1-228ENST00000618469 SLC26A8Q96RN1 970 aa24.07■■□□□ 1.44
BRCA1-228ENST00000618469 ROBO1Q9Y6N7 1651 aa24.07■■□□□ 1.44
BRCA1-228ENST00000618469 MYO5BQ9ULV0 1848 aa24.07■■□□□ 1.44
BRCA1-228ENST00000618469 SETD1AO15047 1707 aaKnown RBP24.07■■□□□ 1.44
BRCA1-228ENST00000618469 FAM135BQ49AJ0 1406 aa24.05■■□□□ 1.44
BRCA1-228ENST00000618469 PROSER2Q86WR7 435 aaPredicted RBP24.05■■□□□ 1.44
BRCA1-228ENST00000618469 SLC52A1Q9NWF4 448 aa24.05■■□□□ 1.44
BRCA1-228ENST00000618469 TMEM2Q9UHN6 1383 aa24.03■■□□□ 1.44
BRCA1-228ENST00000618469 TMEM131LA2VDJ0 1609 aa24.02■■□□□ 1.44
BRCA1-228ENST00000618469 KCNA6P17658 529 aa23.99■■□□□ 1.43
BRCA1-228ENST00000618469 TRIM52Q96A61 297 aa23.99■■□□□ 1.43
BRCA1-228ENST00000618469 BCANQ96GW7 911 aa23.99■■□□□ 1.43
BRCA1-228ENST00000618469 TRPM2O94759 1503 aa23.97■■□□□ 1.43
BRCA1-228ENST00000618469 PHLPP1O60346 1717 aa23.95■■□□□ 1.42
BRCA1-228ENST00000618469 CLTCL1P53675 1640 aa23.95■■□□□ 1.42
BRCA1-228ENST00000618469 ZFYVE9O95405 1425 aa23.93■■□□□ 1.42
BRCA1-228ENST00000618469 CHGAP10645 457 aaKnown RBP23.93■■□□□ 1.42
BRCA1-228ENST00000618469 RIMS2Q9UQ26 1411 aa23.92■■□□□ 1.42
BRCA1-228ENST00000618469 SLC4A1APQ9BWU0 796 aaKnown RBP23.9■■□□□ 1.42
BRCA1-228ENST00000618469 SLAIN2Q9P270 581 aa23.9■■□□□ 1.42
BRCA1-228ENST00000618469 SETD5Q9C0A6 1442 aa23.89■■□□□ 1.41
BRCA1-228ENST00000618469 MSH6P52701 1360 aa23.88■■□□□ 1.41
BRCA1-228ENST00000618469 KIF1BO60333 1816 aa23.87■■□□□ 1.41
BRCA1-228ENST00000618469 NWD1Q149M9 1564 aa23.86■■□□□ 1.41
BRCA1-228ENST00000618469 PPP1R15AO75807 674 aaPredicted RBP23.85■■□□□ 1.41
BRCA1-228ENST00000618469 NKTRP30414 1462 aaKnown RBP23.84■■□□□ 1.41
BRCA1-228ENST00000618469 JCADQ9P266 1359 aa23.84■■□□□ 1.41
BRCA1-228ENST00000618469 RAB3GAP2Q9H2M9 1393 aa23.83■■□□□ 1.41
BRCA1-228ENST00000618469 PLEKHG1Q9ULL1 1385 aa23.83■■□□□ 1.41
BRCA1-228ENST00000618469 MEX3CQ5U5Q3 659 aaKnown RBP23.81■■□□□ 1.4
BRCA1-228ENST00000618469 NUTM2DQ5VT03 806 aaPredicted RBP23.81■■□□□ 1.4
BRCA1-228ENST00000618469 CHD2O14647 1828 aaKnown RBP23.81■■□□□ 1.4
BRCA1-228ENST00000618469 LRP6O75581 1613 aa23.81■■□□□ 1.4
BRCA1-228ENST00000618469 C14orf37Q86TY3 774 aa23.8■■□□□ 1.4
BRCA1-228ENST00000618469 COL16A1Q07092 1604 aaPredicted RBP23.8■■□□□ 1.4
BRCA1-228ENST00000618469 HDGFP51858 240 aaKnown RBP23.79■■□□□ 1.4
BRCA1-228ENST00000618469 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.79■■□□□ 1.4
BRCA1-228ENST00000618469 FOXD1Q16676 465 aa23.78■■□□□ 1.4
BRCA1-228ENST00000618469 NEXMIFQ5QGS0 1516 aa23.78■■□□□ 1.4
BRCA1-228ENST00000618469 DIP2AQ14689 1571 aa23.78■■□□□ 1.4
BRCA1-228ENST00000618469 ZNF326Q5BKZ1 582 aaKnown RBP23.77■■□□□ 1.4
BRCA1-228ENST00000618469 MPHOSPH9Q99550 1183 aa23.77■■□□□ 1.4
BRCA1-228ENST00000618469 UPF1Q92900 1129 aaKnown RBP eCLIP23.76■■□□□ 1.39
BRCA1-228ENST00000618469 ACIN1Q9UKV3 1341 aaKnown RBP23.76■■□□□ 1.39
BRCA1-228ENST00000618469 NRXN3Q9Y4C0 1643 aa23.73■■□□□ 1.39
BRCA1-228ENST00000618469 NUTM2BA6NNL0 878 aaPredicted RBP23.73■■□□□ 1.39
BRCA1-228ENST00000618469 NUTM2EB1AL46 878 aaPredicted RBP23.73■■□□□ 1.39
BRCA1-228ENST00000618469 NUTM2AQ8IVF1 878 aaPredicted RBP23.73■■□□□ 1.39
BRCA1-228ENST00000618469 CCDC144AA2RUR9 1427 aa23.73■■□□□ 1.39
BRCA1-228ENST00000618469 ADAMTS13Q76LX8 1427 aa23.73■■□□□ 1.39
BRCA1-228ENST00000618469 SETBP1Q9Y6X0 1596 aa23.72■■□□□ 1.39
BRCA1-228ENST00000618469 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.71■■□□□ 1.39
BRCA1-228ENST00000618469 ZNF772Q68DY9 489 aaPredicted RBP23.69■■□□□ 1.38
BRCA1-228ENST00000618469 PPLO60437 1756 aa23.69■■□□□ 1.38
BRCA1-228ENST00000618469 SPATA31A6Q5VVP1 1343 aa23.68■■□□□ 1.38
BRCA1-228ENST00000618469 ATF3P18847 181 aa23.67■■□□□ 1.38
BRCA1-228ENST00000618469 TBX22Q9Y458 520 aa23.66■■□□□ 1.38
BRCA1-228ENST00000618469 RXRBP28702 533 aa23.65■■□□□ 1.38
BRCA1-228ENST00000618469 SHPRHQ149N8 1683 aa23.64■■□□□ 1.38
BRCA1-228ENST00000618469 CADPS2Q86UW7 1296 aa23.63■■□□□ 1.37
BRCA1-228ENST00000618469 C19orf44Q9H6X5 657 aa23.63■■□□□ 1.37
BRCA1-228ENST00000618469 IFT172Q9UG01 1749 aa23.63■■□□□ 1.37
BRCA1-228ENST00000618469 AHDC1Q5TGY3 1603 aaPredicted RBP23.62■■□□□ 1.37
BRCA1-228ENST00000618469 SPATA31E1Q6ZUB1 1445 aa23.62■■□□□ 1.37
BRCA1-228ENST00000618469 PIK3R4Q99570 1358 aa23.62■■□□□ 1.37
BRCA1-228ENST00000618469 BRINP3Q76B58 766 aa23.61■■□□□ 1.37
BRCA1-228ENST00000618469 XRN1Q8IZH2 1706 aaKnown RBP23.61■■□□□ 1.37
BRCA1-228ENST00000618469 AMOTL2Q9Y2J4 779 aa23.59■■□□□ 1.37
BRCA1-228ENST00000618469 AFF2P51816 1311 aa23.59■■□□□ 1.37
BRCA1-228ENST00000618469 RPGRIP1LQ68CZ1 1315 aa23.59■■□□□ 1.37
BRCA1-228ENST00000618469 PTPRUQ92729 1446 aa23.58■■□□□ 1.36
BRCA1-228ENST00000618469 NCOA3Q9Y6Q9 1424 aa23.58■■□□□ 1.36
BRCA1-228ENST00000618469 HRCP23327 699 aa23.57■■□□□ 1.36
BRCA1-228ENST00000618469 DDX17Q92841 729 aaKnown RBP23.57■■□□□ 1.36
BRCA1-228ENST00000618469 VGFO15240 615 aaPredicted RBP23.55■■□□□ 1.36
BRCA1-228ENST00000618469 RGL3Q3MIN7 710 aa23.55■■□□□ 1.36
BRCA1-228ENST00000618469 METP08581 1390 aa23.54■■□□□ 1.36
BRCA1-228ENST00000618469 C8orf37Q96NL8 207 aa23.53■■□□□ 1.36
BRCA1-228ENST00000618469 ANKRD30BQ9BXX2 1392 aa23.52■■□□□ 1.36
BRCA1-228ENST00000618469 ASXL1Q8IXJ9 1541 aa23.51■■□□□ 1.35
BRCA1-228ENST00000618469 QTRT2Q9H974 415 aaKnown RBP23.49■■□□□ 1.35
BRCA1-228ENST00000618469 RGS12O14924 1447 aa23.48■■□□□ 1.35
BRCA1-228ENST00000618469 ADGRF5Q8IZF2 1346 aa23.47■■□□□ 1.35
BRCA1-228ENST00000618469 PIK3C2GO75747 1445 aa23.46■■□□□ 1.35
BRCA1-228ENST00000618469 MYOM2P54296 1465 aa23.46■■□□□ 1.35
BRCA1-228ENST00000618469 MST1RQ04912 1400 aa23.46■■□□□ 1.35
BRCA1-228ENST00000618469 CDK12Q9NYV4 1490 aaPredicted RBP23.46■■□□□ 1.35
BRCA1-228ENST00000618469 NHSL1Q5SYE7 1610 aa23.45■■□□□ 1.34
BRCA1-228ENST00000618469 ADAMTS2O95450 1211 aa23.45■■□□□ 1.34
BRCA1-228ENST00000618469 NALCNQ8IZF0 1738 aa23.44■■□□□ 1.34
BRCA1-228ENST00000618469 PTCH1Q13635 1447 aa23.43■■□□□ 1.34
BRCA1-228ENST00000618469 LRRC59Q96AG4 307 aaKnown RBP23.43■■□□□ 1.34
BRCA1-228ENST00000618469 LAMC1P11047 1609 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 126.3 ms